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  5. Sacu_v1.1_s0015.g006564

Sacu_v1.1_s0015.g006564


Description : not classified & original description: CDS=1-1977


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0015.g006564

Target Alias Description ECC score Gene Family Method Actions
Ala_g09700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17654 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g20034 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24223 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g35637 OTP86 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g39284 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63751 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g62402 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.05 OrthoFinder output from all 47 species
Azfi_s0027.g023505 No alias not classified & original description: CDS=32-2620 0.04 OrthoFinder output from all 47 species
Dac_g31017 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13332 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g39051 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57068 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15709 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g13891 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g20467 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21861 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23937 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41901 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g44964 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45659 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e026664_P002 Zm00001e026664 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001216 DNA-binding transcription activator activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 506 543
IPR002885 Pentatricopeptide_repeat 101 149
IPR002885 Pentatricopeptide_repeat 306 336
IPR002885 Pentatricopeptide_repeat 580 602
IPR002885 Pentatricopeptide_repeat 407 437
IPR002885 Pentatricopeptide_repeat 277 303
IPR002885 Pentatricopeptide_repeat 175 201
IPR002885 Pentatricopeptide_repeat 480 502
IPR002885 Pentatricopeptide_repeat 379 403
IPR002885 Pentatricopeptide_repeat 205 235
No external refs found!