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  5. Sacu_v1.1_s0015.g006646

Sacu_v1.1_s0015.g006646 (PGP20)


Aliases : PGP20

Description : subfamily ABCB transporter & original description: CDS=24-3872


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0015.g006646

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00128080 evm_27.TU.AmTr_v1... Putative multidrug resistance protein OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
AMTR_s00145p00075460 PGP20,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AT2G39480 PGP6 P-glycoprotein 6 0.09 OrthoFinder output from all 47 species
AT3G55320 PGP20 P-glycoprotein 20 0.02 OrthoFinder output from all 47 species
Adi_g019429 PGP20 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Als_g34073 PGP20 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g02407 PGP20 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g38133 No alias subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20592.t1 PGP6, Aspi01Gene20592 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35821.t1 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene40552.t1 PGP1, ABCB1,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45620.t1 PGP11, Aspi01Gene45620 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62048.t2 PGP2, Aspi01Gene62048 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0002.g001326 PGP20 subfamily ABCB transporter & original description: CDS=439-4584 0.04 OrthoFinder output from all 47 species
Azfi_s0230.g059155 No alias not classified & original description: CDS=1-966 0.02 OrthoFinder output from all 47 species
Azfi_s2496.g111845 ABCB19,... subfamily ABCB transporter & original description: CDS=142-3066 0.03 OrthoFinder output from all 47 species
Ceric.1Z238200.1 Ceric.1Z238200 subfamily ABCB transporter & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.36G048300.1 Ceric.36G048300 subfamily ABCB transporter & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000572.5 PGP1, ABCB1, ATPGP1 Solute transport.primary active transport.ABC... 0.01 OrthoFinder output from all 47 species
Cre17.g725150 ATPGP4, PGP4, ABCB4, MDR4 ABC transporter B family member 7 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g22175 PGP20 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12010 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21294 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013125001 PGP2 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Gb_11202 PGP11 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_20009 PGP6 subfamily ABCB transporter 0.05 OrthoFinder output from all 47 species
Gb_31652 PGP6 subfamily ABCB transporter 0.07 OrthoFinder output from all 47 species
LOC_Os01g34970.1 PGP11, LOC_Os01g34970 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os01g74470.1 PGP20, LOC_Os01g74470 subfamily ABCB transporter 0.05 OrthoFinder output from all 47 species
LOC_Os03g17180.1 PGP20, LOC_Os03g17180 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
LOC_Os08g45030.1 PGP1, ABCB1,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Lfl_g04289 PGP20 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25534 ABCB19,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_11459g0010 No alias Putative multidrug resistance protein OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_6870g0010 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
MA_9415070g0020 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Mp2g06270.1 PGP20 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Mp7g16060.1 PGP11 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Pir_g04029 PGP11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g03721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo139408 PGP20 Solute transport.primary active transport.ABC... 0.06 OrthoFinder output from all 47 species
Smo419451 No alias Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Solyc03g122070.3.1 ABCB19,... subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Solyc04g010310.4.1 PGP20, Solyc04g010310 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Spa_g18839 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11244 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018488_P001 PGP20, Zm00001e018488 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1057 1204
IPR003439 ABC_transporter-like_ATP-bd 334 476
IPR011527 ABC1_TM_dom 34 262
IPR011527 ABC1_TM_dom 720 984
No external refs found!