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  5. Sacu_v1.1_s0015.g006675

Sacu_v1.1_s0015.g006675 (ATRPS13A, RPS13, PFL2, RPS13A)


Aliases : ATRPS13A, RPS13, PFL2, RPS13A

Description : component *(uS15) of small ribosomal-subunit (SSU) proteome & original description: CDS=145-600


Gene families : OG0001931 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001931_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0015.g006675

Target Alias Description ECC score Gene Family Method Actions
AT4G00100 ATRPS13A, RPS13,... ribosomal protein S13A 0.03 OrthoFinder output from all 47 species
Ceric.14G028300.1 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dac_g03966 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Gb_16397 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os08g02410.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species
Len_g05038 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Len_g54875 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Mp4g03410.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.02 OrthoFinder output from all 47 species
Nbi_g15982 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g56598 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e029210_P002 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004807 triose-phosphate isomerase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR000589 Ribosomal_S15 83 146
IPR012606 Ribosomal_S13/S15_N 1 60
No external refs found!