Ehy_g06203 (ATVPS54, VPS54)

Aliases : ATVPS54, VPS54

Description : GARP-specific component *(VPS54) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: none

Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ehy_g06203
Cluster	HCCA: Cluster_66

Target	Alias	Description	ECC score	Gene Family Method
Gb_03763	ATVPS54, VPS54	GARP-specific component VPS54 of GARP/EARP...	0.03	OrthoFinder output from all 47 species
LOC_Os04g13470.1	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.02	OrthoFinder output from all 47 species
Nbi_g16046	ATVPS54, VPS54	GARP-specific component *(VPS54) of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Solyc02g030100.4.1	ATVPS54, VPS54,...	Vacuolar protein sorting-associated protein 54,...	0.02	OrthoFinder output from all 47 species
Solyc02g030110.2.1	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Zm00001e008702_P001	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.03	OrthoFinder output from all 47 species
Zm00001e040599_P001	ATVPS54, VPS54,...	GARP-specific component VPS54 of GARP/EARP...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	Interproscan
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016670	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016972	thiol oxidase activity	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012501	Vps54_C	806	937

External Links

No external refs found!

Ehy_g06203 (ATVPS54, VPS54)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation