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  5. Sacu_v1.1_s0018.g007452

Sacu_v1.1_s0018.g007452


Description : not classified & original description: CDS=1-2322


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0018.g007452

Target Alias Description ECC score Gene Family Method Actions
AT5G40405 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g036713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g096157 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g09730 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14128 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37552 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16165 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18330 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g22438 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33579 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g43404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0544.g076391 No alias not classified & original description: CDS=1-906 0.03 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.02 OrthoFinder output from all 47 species
Azfi_s2932.g113765 CRR22 not classified & original description: CDS=1-1710 0.04 OrthoFinder output from all 47 species
Cba_g00281 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07752 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19054 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43254 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14626 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36025 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g45110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033872001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
LOC_Os01g11470.1 LOC_Os01g11470 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os05g24150.1 LOC_Os05g24150 Pentatricopeptide repeat-containing protein At2g34400... 0.02 OrthoFinder output from all 47 species
Len_g04836 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18541 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19012 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g42306 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44793 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16581 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g06496 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43552 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46028 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33384 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03324 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57550 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63397 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g02448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22788 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36544 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g43221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g45851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51541 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g114660.1.1 Solyc03g114660 Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
Solyc09g090440.1.1 LPA66, Solyc09g090440 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Spa_g13891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g18930 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20412 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g31666 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0001216 DNA-binding transcription activator activity IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 581 602
IPR002885 Pentatricopeptide_repeat 182 204
IPR002885 Pentatricopeptide_repeat 280 304
IPR002885 Pentatricopeptide_repeat 479 502
IPR002885 Pentatricopeptide_repeat 379 401
IPR002885 Pentatricopeptide_repeat 110 139
IPR002885 Pentatricopeptide_repeat 47 73
IPR002885 Pentatricopeptide_repeat 211 236
IPR002885 Pentatricopeptide_repeat 509 537
IPR002885 Pentatricopeptide_repeat 629 689
IPR002885 Pentatricopeptide_repeat 405 452
No external refs found!