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  5. Sacu_v1.1_s0019.g007686

Sacu_v1.1_s0019.g007686


Description : not classified & original description: CDS=1-1089


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0019.g007686
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00248070 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
AMTR_s00057p00172690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
AMTR_s00077p00191560 OTP82,... Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
AMTR_s00111p00107400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.05 OrthoFinder output from all 47 species
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Als_g18410 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g09402 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene02394.t1 Aspi01Gene02394 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g37893 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.09G023600.1 Ceric.09G023600 not classified & original description: pacid=50587368... 0.04 OrthoFinder output from all 47 species
Ceric.15G051800.1 VAC1, ECB2,... not classified & original description: pacid=50639747... 0.04 OrthoFinder output from all 47 species
Ceric.18G001000.1 Ceric.18G001000 not classified & original description: pacid=50621627... 0.05 OrthoFinder output from all 47 species
Ceric.18G049200.1 Ceric.18G049200 not classified & original description: pacid=50621468... 0.04 OrthoFinder output from all 47 species
Ceric.1Z242100.1 CRR22, Ceric.1Z242100 not classified & original description: pacid=50573437... 0.04 OrthoFinder output from all 47 species
Ceric.26G046300.1 Ceric.26G046300 not classified & original description: pacid=50599602... 0.05 OrthoFinder output from all 47 species
Ceric.39G053500.1 Ceric.39G053500 not classified & original description: pacid=50582600... 0.05 OrthoFinder output from all 47 species
Dcu_g51593 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01021576001 BRCA1, ATBRCA1 DNA damage response.BRCA1–BARD1 DNA-damage response... 0.02 OrthoFinder output from all 47 species
Gb_03578 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
LOC_Os01g60000.1 SLO1, LOC_Os01g60000 Pentatricopeptide repeat-containing protein At2g29760,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g58100.1 OTP85, LOC_Os03g58100 RNA editing factor (OTP85) 0.05 OrthoFinder output from all 47 species
LOC_Os07g02280.1 LOC_Os07g02280 RNA editing factor (OTP80) 0.03 OrthoFinder output from all 47 species
Ore_g13293 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g33764 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53705 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g01598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003605_P001 DOT4, Zm00001e003605 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Zm00001e011467_P004 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 234 279
No external refs found!