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  5. Sacu_v1.1_s0019.g007839

Sacu_v1.1_s0019.g007839


Description : not classified & original description: CDS=1-7737


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0019.g007839
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00191560 OTP82,... Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Aob_g09402 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0005.g009069 CRR22 not classified & original description: CDS=1-1992 0.05 OrthoFinder output from all 47 species
Azfi_s0117.g046569 No alias not classified & original description: CDS=1-2520 0.05 OrthoFinder output from all 47 species
Cba_g20881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G023600.1 Ceric.09G023600 not classified & original description: pacid=50587368... 0.04 OrthoFinder output from all 47 species
Ceric.15G051800.1 VAC1, ECB2,... not classified & original description: pacid=50639747... 0.04 OrthoFinder output from all 47 species
Ceric.18G001000.1 Ceric.18G001000 not classified & original description: pacid=50621627... 0.05 OrthoFinder output from all 47 species
Ceric.18G049200.1 Ceric.18G049200 not classified & original description: pacid=50621468... 0.04 OrthoFinder output from all 47 species
Ceric.1Z242100.1 CRR22, Ceric.1Z242100 not classified & original description: pacid=50573437... 0.04 OrthoFinder output from all 47 species
Ceric.26G046300.1 Ceric.26G046300 not classified & original description: pacid=50599602... 0.04 OrthoFinder output from all 47 species
Ceric.38G035700.1 Ceric.38G035700 not classified & original description: pacid=50579678... 0.05 OrthoFinder output from all 47 species
Ceric.39G053500.1 Ceric.39G053500 not classified & original description: pacid=50582600... 0.05 OrthoFinder output from all 47 species
Dac_g40749 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_18015 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 OrthoFinder output from all 47 species
Gb_33693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 2134 2179
IPR002885 Pentatricopeptide_repeat 377 424
IPR002885 Pentatricopeptide_repeat 275 322
IPR002885 Pentatricopeptide_repeat 173 220
IPR002885 Pentatricopeptide_repeat 480 527
IPR002885 Pentatricopeptide_repeat 2233 2279
IPR002885 Pentatricopeptide_repeat 990 1036
IPR002885 Pentatricopeptide_repeat 1423 1470
IPR002885 Pentatricopeptide_repeat 2033 2079
IPR002885 Pentatricopeptide_repeat 1726 1774
IPR002885 Pentatricopeptide_repeat 887 934
IPR002885 Pentatricopeptide_repeat 1931 1977
IPR002885 Pentatricopeptide_repeat 582 629
IPR002885 Pentatricopeptide_repeat 684 730
IPR002885 Pentatricopeptide_repeat 1525 1571
IPR002885 Pentatricopeptide_repeat 1829 1875
IPR002885 Pentatricopeptide_repeat 78 104
IPR002885 Pentatricopeptide_repeat 1803 1826
IPR002885 Pentatricopeptide_repeat 2207 2231
IPR002885 Pentatricopeptide_repeat 1066 1090
IPR002885 Pentatricopeptide_repeat 789 818
IPR002885 Pentatricopeptide_repeat 1629 1657
No external refs found!