Description : component *(SYF2) of MAC spliceosome-associated complex & original description: CDS=99-1115
Gene families : OG0003956 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003956_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sacu_v1.1_s0023.g008774 | |
| Cluster | HCCA: Cluster_47 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00020693.8 | No alias | RNA processing.RNA splicing.spliceosome-associated... | 0.01 | OrthoFinder output from all 47 species | |
| Cre01.g037400 | No alias | Protein modification.protein folding and quality... | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g12211 | No alias | component *(SYF2) of MAC spliceosome-associated complex... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g15334 | No alias | component *(SYF2) of MAC spliceosome-associated complex... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g29172 | No alias | component *(SYF2) of MAC spliceosome-associated complex... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e013248_P002 | Zm00001e013248 | component SYF2 of non-snRNP MOS4-associated complex | 0.01 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005739 | mitochondrion | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
| MF | GO:0019786 | Atg8-specific peptidase activity | IEP | HCCA |
| MF | GO:0019899 | enzyme binding | IEP | HCCA |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | HCCA |
| CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
| MF | GO:0033926 | glycopeptide alpha-N-acetylgalactosaminidase activity | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | HCCA |
| CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140103 | catalytic activity, acting on a glycoprotein | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013260 | mRNA_splic_SYF2 | 184 | 331 |
| No external refs found! |
