Description : component *(eL30) of large ribosomal-subunit (LSU) proteome & original description: CDS=92-427
Gene families : OG0000968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000968_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sacu_v1.1_s0023.g008793 | |
| Cluster | HCCA: Cluster_57 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G18740 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g33421 | No alias | component *(eL30) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0043.g026966 | No alias | component *(eL30) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g77370 | No alias | component *(eL30) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.31G042300.1 | Ceric.31G042300 | component *(eL30) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Cre10.g420750 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01022191001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_02409 | No alias | component RPL30 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g16890.1 | LOC_Os01g16890 | component RPL30 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species | |
| MA_6354g0010 | No alias | component RPL30 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c12_9290V3.1 | Pp3c12_9290 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.01 | OrthoFinder output from all 47 species | |
| Pp3c16_10400V3.1 | Pp3c16_10400 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c4_15480V3.1 | Pp3c4_15480 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g11494 | No alias | component *(eL30) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Smo19071 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g009100.4.1 | Solyc01g009100 | component RPL30 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g071490.2.1 | Solyc11g071490 | component RPL30 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g00831 | No alias | component *(eL30) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g05827 | No alias | component *(eL30) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0002097 | tRNA wobble base modification | IEP | HCCA |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0004486 | methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity | IEP | HCCA |
| MF | GO:0004488 | methylenetetrahydrofolate dehydrogenase (NADP+) activity | IEP | HCCA |
| MF | GO:0004556 | alpha-amylase activity | IEP | HCCA |
| CC | GO:0005759 | mitochondrial matrix | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008134 | transcription factor binding | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016160 | amylase activity | IEP | HCCA |
| MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | HCCA |
| MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016746 | acyltransferase activity | IEP | HCCA |
| MF | GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | IEP | HCCA |
| MF | GO:0017025 | TBP-class protein binding | IEP | HCCA |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | HCCA |
| CC | GO:0033588 | elongator holoenzyme complex | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| CC | GO:0043233 | organelle lumen | IEP | HCCA |
| MF | GO:0051287 | NAD binding | IEP | HCCA |
| CC | GO:0070013 | intracellular organelle lumen | IEP | HCCA |
| MF | GO:0070403 | NAD+ binding | IEP | HCCA |
| MF | GO:0070567 | cytidylyltransferase activity | IEP | HCCA |
| MF | GO:0140296 | general transcription initiation factor binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004038 | Ribosomal_L7Ae/L30e/S12e/Gad45 | 13 | 105 |
| No external refs found! |
