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  5. Sacu_v1.1_s0023.g008877

Sacu_v1.1_s0023.g008877


Description : not classified & original description: CDS=1-2595


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0023.g008877
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00240430 OSB3,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
AT2G35030 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g005343 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g025081 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g049577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27794 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05074 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37552 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0015.g013967 No alias not classified & original description: CDS=1-2631 0.02 OrthoFinder output from all 47 species
Cba_g06576 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19909 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g42618 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.12G025700.1 Ceric.12G025700 not classified & original description: pacid=50601618... 0.04 OrthoFinder output from all 47 species
Ceric.13G069100.1 CRR22, Ceric.13G069100 not classified & original description: pacid=50635982... 0.03 OrthoFinder output from all 47 species
Ceric.14G013000.1 Ceric.14G013000 not classified & original description: pacid=50634838... 0.04 OrthoFinder output from all 47 species
Ceric.24G019600.1 Ceric.24G019600 not classified & original description: pacid=50629269... 0.03 OrthoFinder output from all 47 species
Ceric.27G070400.1 CRR22, Ceric.27G070400 not classified & original description: pacid=50605716... 0.03 OrthoFinder output from all 47 species
Ceric.31G027200.1 OTP86, Ceric.31G027200 not classified & original description: pacid=50574199... 0.03 OrthoFinder output from all 47 species
Ceric.39G011500.1 Ceric.39G011500 not classified & original description: pacid=50582697... 0.03 OrthoFinder output from all 47 species
Dcu_g05782 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08305 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08773 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40971 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g42474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43326 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g24299 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01033872001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
LOC_Os05g24150.1 LOC_Os05g24150 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
LOC_Os08g33700.1 LOC_Os08g33700 Pentatricopeptide repeat-containing protein At3g47530... 0.03 OrthoFinder output from all 47 species
Len_g18041 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05873 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19660 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43235 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53982 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g05209 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13891 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g14924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18645 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26887 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35988 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g40244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50908 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo21427 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Spa_g09924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013232_P001 Zm00001e013232 Pentatricopeptide repeat-containing protein At2g36730... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0070939 Dsl1/NZR complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 707 753
IPR002885 Pentatricopeptide_repeat 301 346
IPR002885 Pentatricopeptide_repeat 197 244
IPR002885 Pentatricopeptide_repeat 95 143
IPR002885 Pentatricopeptide_repeat 401 447
IPR002885 Pentatricopeptide_repeat 503 550
IPR002885 Pentatricopeptide_repeat 605 652
IPR002885 Pentatricopeptide_repeat 477 501
IPR002885 Pentatricopeptide_repeat 274 297
IPR002885 Pentatricopeptide_repeat 70 93
IPR002885 Pentatricopeptide_repeat 782 805
No external refs found!