1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0025.g009293

Sacu_v1.1_s0025.g009293


Description : RNA editing factor *(ORRM3) & original description: CDS=75-866


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0025.g009293

Target Alias Description ECC score Gene Family Method Actions
Ala_g05819 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28477 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07993 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06469 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0005.g009417 No alias not classified & original description: CDS=1-471 0.04 OrthoFinder output from all 47 species
Azfi_s0008.g011258 CCR2, ATGRP7,... not classified & original description: CDS=99-740 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031234 No alias not classified & original description: CDS=60-764 0.04 OrthoFinder output from all 47 species
Azfi_s0232.g059291 GRP2, ATGRP2, GR-RBP2 not classified & original description: CDS=1-585 0.04 OrthoFinder output from all 47 species
Azfi_s0345.g065814 GR-RBP3 not classified & original description: CDS=194-694 0.04 OrthoFinder output from all 47 species
Cba_g55211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g02153 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g33870 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16014 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04232 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g11735 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
MA_717958g0010 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.01 OrthoFinder output from all 47 species
Msp_g12851 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23738 No alias RNA chaperone *(RZ1) & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g33177 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04318 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17461 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09617 No alias RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g09618 No alias RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38661 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g30378 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028502_P003 Zm00001e028502 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e039608_P001 GR-RBP3, Zm00001e039608 RNA editing factor (ORRM) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 38 107
No external refs found!