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  5. Sacu_v1.1_s0026.g009590

Sacu_v1.1_s0026.g009590


Description : not classified & original description: CDS=1-2562


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0026.g009590

Target Alias Description ECC score Gene Family Method Actions
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.02 OrthoFinder output from all 47 species
Adi_g004462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075132 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101037 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21991 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07148 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35630 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g36199 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28154 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67763 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0011.g012554 No alias not classified & original description: CDS=1-2283 0.03 OrthoFinder output from all 47 species
Azfi_s0075.g037545 No alias not classified & original description: CDS=1-2337 0.04 OrthoFinder output from all 47 species
Azfi_s0158.g053860 CRR2 not classified & original description: CDS=1-978 0.04 OrthoFinder output from all 47 species
Azfi_s0168.g054648 No alias not classified & original description: CDS=1-843 0.04 OrthoFinder output from all 47 species
Cba_g05310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G033000.1 Ceric.06G033000 not classified & original description: pacid=50620249... 0.05 OrthoFinder output from all 47 species
Ceric.18G049100.1 Ceric.18G049100 not classified & original description: pacid=50621467... 0.03 OrthoFinder output from all 47 species
Ceric.36G060000.1 Ceric.36G060000 not classified & original description: pacid=50568455... 0.03 OrthoFinder output from all 47 species
Dde_g03935 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05757 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g07956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15555 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15898 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22358 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26477 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29998 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g34076 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48923 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 OrthoFinder output from all 47 species
GSVIVT01036169001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Len_g03863 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05403 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18071 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g33253 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10431227g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_11074g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_138676g0010 EMB2261 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species
MA_17949g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_681272g0010 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
MA_9526611g0020 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Nbi_g15428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23619 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g41042 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g37890 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g33539 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g02933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g03800 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12011 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g12246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16575 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16664 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17245 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17656 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19790 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26608 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g28579 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35116 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37180 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38738 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g45851 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo134463 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Spa_g29172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 346 386
IPR002885 Pentatricopeptide_repeat 694 740
IPR002885 Pentatricopeptide_repeat 492 522
IPR002885 Pentatricopeptide_repeat 768 792
IPR046848 E_motif 811 844
IPR002885 Pentatricopeptide_repeat 389 435
IPR002885 Pentatricopeptide_repeat 288 335
IPR002885 Pentatricopeptide_repeat 591 638
IPR002885 Pentatricopeptide_repeat 83 132
IPR002885 Pentatricopeptide_repeat 185 231
No external refs found!