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  5. Sacu_v1.1_s0029.g010161

Sacu_v1.1_s0029.g010161


Description : not classified & original description: CDS=1-2802


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0029.g010161
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00113430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g18485... 0.03 OrthoFinder output from all 47 species
AT5G52630 MEF1 mitochondrial RNAediting factor 1 0.01 OrthoFinder output from all 47 species
Adi_g003776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g072273 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g076457 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085510 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g095327 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099291 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100883 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07273 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g15073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36539 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09923 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16102 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18405 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01654.t1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14256.t1 Aspi01Gene14256 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene29787.t2 Aspi01Gene29787 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42676.t1 Aspi01Gene42676 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49181.t1 Aspi01Gene49181 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61045.t1 VAC1, ECB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71861.t1 CRR2, Aspi01Gene71861 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001245 OTP82 not classified & original description: CDS=1-1971 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009216 No alias not classified & original description: CDS=1-2520 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011649 No alias not classified & original description: CDS=1-3195 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030697 No alias not classified & original description: CDS=1-2361 0.01 OrthoFinder output from all 47 species
Azfi_s0059.g034666 No alias not classified & original description: CDS=1-1770 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035795 No alias not classified & original description: CDS=1-2223 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g044025 No alias not classified & original description: CDS=1-2481 0.03 OrthoFinder output from all 47 species
Azfi_s0292.g063377 OTP86 not classified & original description: CDS=1-2337 0.02 OrthoFinder output from all 47 species
Azfi_s0301.g063681 REME1 not classified & original description: CDS=1-1416 0.03 OrthoFinder output from all 47 species
Azfi_s0551.g076599 No alias not classified & original description: CDS=1-1686 0.04 OrthoFinder output from all 47 species
Cba_g05269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06575 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06593 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22397 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g26660 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.20G007900.1 Ceric.20G007900 not classified & original description: pacid=50566810... 0.03 OrthoFinder output from all 47 species
Ceric.29G050000.1 Ceric.29G050000 ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g35962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g39198 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g07128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03570 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g37225.1 LOC_Os05g37225 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os06g39650.1 LOC_Os06g39650 Pentatricopeptide repeat-containing protein At1g31430... 0.03 OrthoFinder output from all 47 species
Len_g07300 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18279 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19012 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07376 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07796 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g17373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g17466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g14266 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41304 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30107 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57859 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004758 No alias not classified & original description: CDS=1-2223 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023182 No alias not classified & original description: CDS=1-4812 0.03 OrthoFinder output from all 47 species
Sam_g11676 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g17518 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28894 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30124 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g34625 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g45851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50005 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo98551 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.01 OrthoFinder output from all 47 species
Spa_g02637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05116 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g44081 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016872 intramolecular lyase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 286 312
IPR002885 Pentatricopeptide_repeat 389 415
IPR002885 Pentatricopeptide_repeat 114 144
IPR002885 Pentatricopeptide_repeat 591 614
IPR002885 Pentatricopeptide_repeat 790 811
IPR002885 Pentatricopeptide_repeat 619 648
IPR002885 Pentatricopeptide_repeat 314 360
IPR002885 Pentatricopeptide_repeat 213 249
IPR002885 Pentatricopeptide_repeat 718 764
IPR002885 Pentatricopeptide_repeat 438 496
No external refs found!