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  5. Sacu_v1.1_s0030.g010465

Sacu_v1.1_s0030.g010465


Description : not classified & original description: CDS=1-2262


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0030.g010465

Target Alias Description ECC score Gene Family Method Actions
AT3G11460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g011918 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16840 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17262 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19189 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g31156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17441 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0020.g015553 OTP84 not classified & original description: CDS=36-2027 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029919 No alias not classified & original description: CDS=1-2448 0.02 OrthoFinder output from all 47 species
Azfi_s0652.g081079 No alias not classified & original description: CDS=1-2169 0.02 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.02 OrthoFinder output from all 47 species
Azfi_s3922.g117339 No alias not classified & original description: CDS=1-831 0.02 OrthoFinder output from all 47 species
Ceric.02G054700.1 Ceric.02G054700 not classified & original description: pacid=50584211... 0.03 OrthoFinder output from all 47 species
Ceric.05G054800.1 Ceric.05G054800 not classified & original description: pacid=50577632... 0.03 OrthoFinder output from all 47 species
Ceric.15G077000.1 EMB2261, Ceric.15G077000 not classified & original description: pacid=50639459... 0.03 OrthoFinder output from all 47 species
Ceric.26G013500.1 Ceric.26G013500 not classified & original description: pacid=50600195... 0.03 OrthoFinder output from all 47 species
Ceric.28G051100.1 Ceric.28G051100 not classified & original description: pacid=50570532... 0.03 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
Dac_g45949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07034 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08709 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g16794 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19078 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38425 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g40733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18670 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g09530.1 LOC_Os04g09530 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species
Lfl_g07128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12012 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15222 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g42868 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g10145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63493 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g14861 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g15168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g05074 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g10509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11913 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18597 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36544 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50534 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo108652 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Spa_g23549 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g44822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07666 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0010024 phytochromobilin biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0050897 cobalt ion binding IEP HCCA
BP GO:0051202 phytochromobilin metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 379 426
IPR002885 Pentatricopeptide_repeat 658 677
IPR002885 Pentatricopeptide_repeat 354 375
IPR002885 Pentatricopeptide_repeat 150 174
IPR002885 Pentatricopeptide_repeat 584 612
IPR002885 Pentatricopeptide_repeat 556 576
IPR002885 Pentatricopeptide_repeat 480 526
IPR002885 Pentatricopeptide_repeat 76 122
IPR002885 Pentatricopeptide_repeat 178 225
No external refs found!