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  5. Sacu_v1.1_s0033.g010984

Sacu_v1.1_s0033.g010984


Description : not classified & original description: CDS=1-2295


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0033.g010984
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
Adi_g004317 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034868 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067914 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g079794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080049 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086463 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099249 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113425 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g23915 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g10028 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12178 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07409 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28661 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03542 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g60598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34036.t1 CRR22, Aspi01Gene34036 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0117.g046569 No alias not classified & original description: CDS=1-2520 0.02 OrthoFinder output from all 47 species
Cba_g05314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45673 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g66834 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35267 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08946 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g44127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22358 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25136 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011333001 SLO1 Pentatricopeptide repeat-containing protein At1g08070,... 0.04 OrthoFinder output from all 47 species
LOC_Os07g15570.1 CRR2, LOC_Os07g15570 Pentatricopeptide repeat-containing protein At2g46050,... 0.02 OrthoFinder output from all 47 species
LOC_Os12g15460.1 LOC_Os12g15460 Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
Len_g44793 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g09602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28498 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15819 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22095 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0153.g023530 CRR22 not classified & original description: CDS=1-2073 0.04 OrthoFinder output from all 47 species
Sam_g21254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55036 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 402 450
IPR002885 Pentatricopeptide_repeat 605 652
IPR002885 Pentatricopeptide_repeat 503 550
IPR002885 Pentatricopeptide_repeat 175 196
IPR002885 Pentatricopeptide_repeat 578 604
IPR002885 Pentatricopeptide_repeat 708 736
IPR002885 Pentatricopeptide_repeat 304 334
IPR002885 Pentatricopeptide_repeat 680 703
IPR002885 Pentatricopeptide_repeat 478 499
IPR002885 Pentatricopeptide_repeat 276 296
IPR002885 Pentatricopeptide_repeat 203 233
No external refs found!