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  5. Sacu_v1.1_s0033.g010996

Sacu_v1.1_s0033.g010996


Description : not classified & original description: CDS=53-3322


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0033.g010996
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
AMTR_s00068p00031610 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g060792 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g23793 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27705 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g31160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g39266 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05010 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19136 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26645 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g54959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0050.g031009 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2424 0.03 OrthoFinder output from all 47 species
Azfi_s0350.g066567 No alias not classified & original description: CDS=1-2610 0.03 OrthoFinder output from all 47 species
Cba_g03378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06574 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07683 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19557 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g32456 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67909 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G121800.1 Ceric.01G121800 not classified & original description: pacid=50593016... 0.03 OrthoFinder output from all 47 species
Dcu_g07737 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08785 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26799 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38682 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19140 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22352 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26090 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g41966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009227001 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
GSVIVT01023345001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
GSVIVT01032721001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.03 OrthoFinder output from all 47 species
Gb_17092 CRR22 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
LOC_Os03g43420.1 OSB1, LOC_Os03g43420 ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Len_g17360 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18456 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g54495 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06706 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_81514g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05873 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08794 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12551 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15248 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34092 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13575 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32558 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57366 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57968 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12943 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53979 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10477 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16575 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39952 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo74762 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Solyc02g076700.1.1 Solyc02g076700 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc02g081900.4.1 OTP84, Solyc02g081900 RNA editing factor (OTP84) 0.02 OrthoFinder output from all 47 species
Spa_g01532 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g11567 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g29657 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20369 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
Zm00001e021457_P001 CRR22, Zm00001e021457 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Zm00001e023498_P001 VAC1, ECB2,... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 365 389
IPR002885 Pentatricopeptide_repeat 193 221
IPR002885 Pentatricopeptide_repeat 393 423
IPR002885 Pentatricopeptide_repeat 264 288
IPR002885 Pentatricopeptide_repeat 693 741
IPR002885 Pentatricopeptide_repeat 593 639
IPR002885 Pentatricopeptide_repeat 795 842
IPR002885 Pentatricopeptide_repeat 290 336
IPR032867 DYW_dom 1010 1088
IPR046848 E_motif 912 974
IPR046849 Eplus_motif 979 1002
No external refs found!