Sacu_v1.1_s0033.g011022


Description : not classified & original description: CDS=1-2751


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0033.g011022

Target Alias Description ECC score Gene Family Method Actions
Dde_g25739 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g04775 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g33676 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06261 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06990 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004138 No alias not classified & original description: CDS=1-2646 0.07 OrthoFinder output from all 47 species
Smo84339 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Zm00001e016281_P001 LPA66, Zm00001e016281 Pentatricopeptide repeat-containing protein At3g62890... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0005778 peroxisomal membrane IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 146 169
IPR002885 Pentatricopeptide_repeat 480 510
IPR002885 Pentatricopeptide_repeat 276 306
IPR002885 Pentatricopeptide_repeat 656 678
IPR002885 Pentatricopeptide_repeat 350 372
IPR002885 Pentatricopeptide_repeat 72 95
IPR002885 Pentatricopeptide_repeat 452 476
IPR002885 Pentatricopeptide_repeat 783 830
IPR002885 Pentatricopeptide_repeat 682 728
IPR002885 Pentatricopeptide_repeat 171 211
IPR002885 Pentatricopeptide_repeat 580 627
IPR002885 Pentatricopeptide_repeat 375 421
No external refs found!