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  5. Sacu_v1.1_s0033.g011031

Sacu_v1.1_s0033.g011031


Description : not classified & original description: CDS=1-2574


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0033.g011031
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272900 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00110050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AT3G26540 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004372 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005739 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g008519 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g012988 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g025630 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034668 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g035455 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036755 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036817 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g043528 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056226 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056630 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057899 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.02 OrthoFinder output from all 47 species
Adi_g059409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060792 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067920 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088362 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g095207 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13651 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32888 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g46569 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g34402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38174 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g04861 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06136 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06359 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g17854 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28618 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30789 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30790 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g39732 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g17095 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g07700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66061.t2 Aspi01Gene66061 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000996 OTP84 not classified & original description: CDS=1-3012 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012382 OTP84 not classified & original description: CDS=1-2100 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012416 No alias not classified & original description: CDS=1-1722 0.03 OrthoFinder output from all 47 species
Azfi_s0011.g012490 No alias not classified & original description: CDS=1-2382 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013865 No alias not classified & original description: CDS=1-1626 0.03 OrthoFinder output from all 47 species
Azfi_s0020.g015476 No alias not classified & original description: CDS=1-3885 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023783 No alias not classified & original description: CDS=1-2922 0.03 OrthoFinder output from all 47 species
Azfi_s0029.g024142 No alias not classified & original description: CDS=203-3646 0.03 OrthoFinder output from all 47 species
Azfi_s0033.g025102 No alias not classified & original description: CDS=1-3510 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025337 DOT4 not classified & original description: CDS=145-3054 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026305 EMB2758 not classified & original description: CDS=1-1827 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029802 No alias not classified & original description: CDS=1-2208 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030882 CRR22 not classified & original description: CDS=1-1611 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033567 EMB2758 not classified & original description: CDS=1-2352 0.03 OrthoFinder output from all 47 species
Azfi_s0139.g051178 No alias not classified & original description: CDS=1-2667 0.03 OrthoFinder output from all 47 species
Azfi_s0250.g060212 CRR22 not classified & original description: CDS=1-2343 0.04 OrthoFinder output from all 47 species
Azfi_s0351.g066580 No alias not classified & original description: CDS=1-3804 0.03 OrthoFinder output from all 47 species
Azfi_s0471.g072918 No alias not classified & original description: CDS=1-3447 0.04 OrthoFinder output from all 47 species
Azfi_s0503.g073910 No alias not classified & original description: CDS=59-2179 0.03 OrthoFinder output from all 47 species
Azfi_s0658.g081287 CRR22 not classified & original description: CDS=1-1986 0.03 OrthoFinder output from all 47 species
Cba_g02672 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g02717 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16716 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29838 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G007000.1 Ceric.09G007000 not classified & original description: pacid=50586983... 0.01 OrthoFinder output from all 47 species
Ceric.09G085300.1 Ceric.09G085300 not classified & original description: pacid=50587383... 0.03 OrthoFinder output from all 47 species
Ceric.20G008800.1 Ceric.20G008800 not classified & original description: pacid=50566037... 0.02 OrthoFinder output from all 47 species
Ceric.39G011500.1 Ceric.39G011500 not classified & original description: pacid=50582697... 0.03 OrthoFinder output from all 47 species
Dac_g18287 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g18582 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g32689 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45940 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g22835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23831 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036975001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.02 OrthoFinder output from all 47 species
LOC_Os01g08120.1 OTP81, LOC_Os01g08120 RNA editing factor (OTP81) 0.01 OrthoFinder output from all 47 species
LOC_Os06g40860.1 LOC_Os06g40860 Pentatricopeptide repeat-containing protein At1g03540... 0.02 OrthoFinder output from all 47 species
LOC_Os11g37330.2 LOI1, MEF11,... RNA editing factor (MEF11) 0.02 OrthoFinder output from all 47 species
Len_g14977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18984 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g25856 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06655 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06850 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g07038 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32453 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_114565g0020 OTP84 Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species
MA_23144g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.01 OrthoFinder output from all 47 species
MA_3462g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.01 OrthoFinder output from all 47 species
Msp_g12146 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31269 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44335 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04968 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15557 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02390 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02979 PTAC9, OSB2 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.02 OrthoFinder output from all 47 species
Ore_g39910 DOT4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g02292 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15855 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g17495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g52500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63512 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63649 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02677 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g12786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23075 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23584 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03921 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06828 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13105 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53384 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08926 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13748 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16146 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19797 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27893 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28767 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38969 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g017370.3.1 Solyc11g017370 RNA editing factor (AEF1) 0.02 OrthoFinder output from all 47 species
Spa_g28927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05207 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g25388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26741 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30348 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31074 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g35061 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species
Zm00001e030553_P001 Zm00001e030553 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0003333 amino acid transmembrane transport IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006865 amino acid transport IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1903825 organic acid transmembrane transport IEP HCCA
BP GO:1905039 carboxylic acid transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 413 459
IPR002885 Pentatricopeptide_repeat 514 561
IPR002885 Pentatricopeptide_repeat 616 664
IPR002885 Pentatricopeptide_repeat 314 344
IPR002885 Pentatricopeptide_repeat 589 610
IPR002885 Pentatricopeptide_repeat 691 712
IPR002885 Pentatricopeptide_repeat 213 240
IPR002885 Pentatricopeptide_repeat 286 307
IPR002885 Pentatricopeptide_repeat 488 513
IPR002885 Pentatricopeptide_repeat 186 207
IPR046848 E_motif 734 793
No external refs found!