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  5. Sacu_v1.1_s0036.g011577

Sacu_v1.1_s0036.g011577


Description : not classified & original description: CDS=124-1962


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0036.g011577

Target Alias Description ECC score Gene Family Method Actions
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aop_g18332 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g62402 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene08990.t1 OTP84, Aspi01Gene08990 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30154.t1 Aspi01Gene30154 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67071.t1 Aspi01Gene67071 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0042.g026907 No alias not classified & original description: CDS=1-447 0.04 OrthoFinder output from all 47 species
Cba_g07743 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29880 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g33624 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.11G080200.1 Ceric.11G080200 not classified & original description: pacid=50595969... 0.04 OrthoFinder output from all 47 species
Dcu_g38523 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os01g60430.1 LOC_Os01g60430 RNA editing factor (MEF10) 0.03 OrthoFinder output from all 47 species
Lfl_g07754 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22460 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13332 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57068 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40196 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g02061 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45297 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g23111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035764_P001 Zm00001e035764 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 138 178
IPR002885 Pentatricopeptide_repeat 442 488
IPR002885 Pentatricopeptide_repeat 240 286
IPR002885 Pentatricopeptide_repeat 416 438
IPR002885 Pentatricopeptide_repeat 344 373
IPR002885 Pentatricopeptide_repeat 74 104
IPR002885 Pentatricopeptide_repeat 509 540
No external refs found!