Sacu_v1.1_s0042.g012712 (ARF6)

Aliases : ARF6

Description : ARF-type transcription factor & original description: CDS=1744-4440

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0042.g012712

Target	Alias	Description	ECC score	Gene Family Method
Adi_g014286	ARF4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g054964	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g059116	ARF6	transcriptional repressor *(IAA/AUX) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g107312	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g02591	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g06750	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g20472	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g14536	ARF1	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g32717	ARF8, ATARF8	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g22075	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene06586.t1	ARF6, Aspi01Gene06586	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.35G054000.1	ARF6, Ceric.35G054000	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Dac_g44007	ARF16	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g16727	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08691	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g20778	ARF14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01025691001	ARF16	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
GSVIVT01035205001	ARF8, ATARF8	Auxin response factor 12 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
LOC_Os02g41800.1	ARF16, LOC_Os02g41800	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os04g43910.1	ARF10, LOC_Os04g43910	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os04g59430.1	ARF17, LOC_Os04g59430	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os05g43920.1	ARF3, ETT, LOC_Os05g43920	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
LOC_Os11g32110.1	HSS, ARF1-BP,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
MA_127981g0010	ARF4	Auxin response factor 4 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp1g12750.1	ARF6	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Msp_g14175	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g15857	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g13614	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g29453	ARF1	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g17376	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19396	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g037530.3.1	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc02g077560.3.1	ARF3, ETT, Solyc02g077560	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Spa_g20525	ARF6	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Spa_g51847	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e006640_P002	MP, IAA24, ARF5,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e025163_P001	ARF6, Zm00001e025163	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e030290_P005	ARF16, Zm00001e030290	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e032423_P002	ARF3, ETT, Zm00001e032423	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e041866_P001	MP, IAA24, ARF5,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e041910_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	762	855
IPR003340	B3_DNA-bd	134	230
IPR010525	ARF_dom	255	338

External Links

No external refs found!

Sacu_v1.1_s0042.g012712 (ARF6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation