1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0042.g012770

Sacu_v1.1_s0042.g012770


Description : not classified & original description: CDS=1-1605


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0042.g012770
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00113430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g18485... 0.04 OrthoFinder output from all 47 species
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.02 OrthoFinder output from all 47 species
AT3G61170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G43790 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g005777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036784 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060808 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g25276 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24411 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g28308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g37733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03827 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05716 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07182 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29210 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30894 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g23407 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23775 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26965 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27914 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37107 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g42859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16353.t1 Aspi01Gene16353 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28168.t1 Aspi01Gene28168 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49181.t1 Aspi01Gene49181 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56416.t1 CRR22, Aspi01Gene56416 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61045.t1 VAC1, ECB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66052.t1 Aspi01Gene66052 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g016134 OTP84 not classified & original description: CDS=1-2358 0.02 OrthoFinder output from all 47 species
Azfi_s0049.g030697 No alias not classified & original description: CDS=1-2361 0.02 OrthoFinder output from all 47 species
Azfi_s0068.g036252 No alias not classified & original description: CDS=1-1656 0.03 OrthoFinder output from all 47 species
Azfi_s0102.g044571 No alias not classified & original description: CDS=1-2829 0.03 OrthoFinder output from all 47 species
Azfi_s0544.g076391 No alias not classified & original description: CDS=1-906 0.02 OrthoFinder output from all 47 species
Azfi_s1721.g106134 CRR22 not classified & original description: CDS=1-1431 0.03 OrthoFinder output from all 47 species
Cba_g05269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45888 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G033100.1 Ceric.02G033100 not classified & original description: pacid=50586102... 0.03 OrthoFinder output from all 47 species
Ceric.12G016200.1 Ceric.12G016200 not classified & original description: pacid=50601153... 0.02 OrthoFinder output from all 47 species
Ceric.14G067900.1 CRR22, Ceric.14G067900 not classified & original description: pacid=50634625... 0.03 OrthoFinder output from all 47 species
Ceric.18G049100.1 Ceric.18G049100 not classified & original description: pacid=50621467... 0.02 OrthoFinder output from all 47 species
Ceric.20G007900.1 Ceric.20G007900 not classified & original description: pacid=50566810... 0.04 OrthoFinder output from all 47 species
Ceric.28G056200.1 Ceric.28G056200 not classified & original description: pacid=50570685... 0.04 OrthoFinder output from all 47 species
Ceric.28G062700.1 Ceric.28G062700 not classified & original description: pacid=50570794... 0.03 OrthoFinder output from all 47 species
Dcu_g07619 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38857 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04950 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12280 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15835 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021576001 BRCA1, ATBRCA1 DNA damage response.BRCA1–BARD1 DNA-damage response... 0.04 OrthoFinder output from all 47 species
LOC_Os01g72049.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species
LOC_Os05g24890.1 LOC_Os05g24890 Pentatricopeptide repeat-containing protein At2g34400... 0.02 OrthoFinder output from all 47 species
LOC_Os08g37520.1 LOC_Os08g37520 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
LOC_Os10g39460.2 LOC_Os10g39460 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g04350 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17711 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g03167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g25431 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34702 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03036 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g34529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023182 No alias not classified & original description: CDS=1-4812 0.03 OrthoFinder output from all 47 species
Sam_g11676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000621_P001 CRR22, Zm00001e000621 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000731 DNA synthesis involved in DNA repair IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 306 355
IPR002885 Pentatricopeptide_repeat 78 101
IPR002885 Pentatricopeptide_repeat 106 135
IPR002885 Pentatricopeptide_repeat 178 204
IPR002885 Pentatricopeptide_repeat 383 409
IPR002885 Pentatricopeptide_repeat 411 438
IPR002885 Pentatricopeptide_repeat 454 474
IPR002885 Pentatricopeptide_repeat 206 233
No external refs found!