1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0048.g013631

Sacu_v1.1_s0048.g013631


Description : subfamily ABCG transporter & original description: CDS=1-2199


Gene families : OG0000438 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000438_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0048.g013631
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AT3G25620 No alias ABC-2 type transporter family protein 0.04 OrthoFinder output from all 47 species
Ala_g18590 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene09991.t1 Aspi01Gene09991 subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36520.t1 Aspi01Gene36520 subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g32789 No alias sporopollenin precursor exporter *(ABCG26) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g19285 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09211 No alias subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01014733001 ABCG26, WBC27 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
LOC_Os08g07010.1 ABCG14, LOC_Os08g07010 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
MA_4863g0010 ABCG26, WBC27 sporopollenin precursor exporter. subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Pir_g15519 No alias subfamily ABCG transporter & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g03210 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29010 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015589 No alias not classified & original description: CDS=22-1557 0.04 OrthoFinder output from all 47 species
Solyc04g006960.3.1 Solyc04g006960 cytokinin transporter (ABCG14). subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Spa_g26315 No alias subfamily ABCG transporter & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g28967 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 463 671
IPR043926 ABCG_dom 332 390
IPR003439 ABC_transporter-like_ATP-bd 154 303
No external refs found!