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  5. Sacu_v1.1_s0053.g014176

Sacu_v1.1_s0053.g014176


Description : not classified & original description: CDS=1-2259


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0053.g014176

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Adi_g005647 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018038 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g096923 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110647 MEF21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13795 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16335 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07405 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19869 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g51296 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27883.t1 Aspi01Gene27883 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0018.g014887 No alias not classified & original description: CDS=1-2661 0.05 OrthoFinder output from all 47 species
Azfi_s0090.g042642 No alias not classified & original description: CDS=39-695 0.02 OrthoFinder output from all 47 species
Azfi_s1395.g102559 No alias not classified & original description: CDS=1-912 0.02 OrthoFinder output from all 47 species
Azfi_s3922.g117339 No alias not classified & original description: CDS=1-831 0.02 OrthoFinder output from all 47 species
Cba_g05302 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g11842 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13545 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20670 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g24621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.19G076100.1 Ceric.19G076100 not classified & original description: pacid=50575482... 0.02 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.02 OrthoFinder output from all 47 species
Ceric.23G037000.1 CRR22, Ceric.23G037000 not classified & original description: pacid=50610097... 0.04 OrthoFinder output from all 47 species
Ceric.25G022800.1 Ceric.25G022800 not classified & original description: pacid=50594192... 0.03 OrthoFinder output from all 47 species
Ceric.39G046500.1 Ceric.39G046500 not classified & original description: pacid=50582543... 0.02 OrthoFinder output from all 47 species
Dac_g43504 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17095 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17164 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g17307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35843 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36588 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02940 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03922 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03997 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23491 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28641 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008721001 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.02 OrthoFinder output from all 47 species
GSVIVT01029254001 OSB4 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
Gb_21443 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
Len_g03238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10317671g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
Msp_g09454 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17295 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g03158 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15249 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13384 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57726 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63456 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63870 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06218 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06423 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12347 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g18667 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g26236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29684 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30207 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36592 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36708 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo91775 No alias Pentatricopeptide repeat-containing protein At4g25270,... 0.02 OrthoFinder output from all 47 species
Solyc03g114660.1.1 Solyc03g114660 Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
Spa_g29565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17320 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g20193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005071_P002 OSB1, Zm00001e005071 ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Zm00001e021453_P001 CRR28, Zm00001e021453 Pentatricopeptide repeat-containing protein At5g06540... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0015850 organic hydroxy compound transport IEP HCCA
BP GO:0015918 sterol transport IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032365 intracellular lipid transport IEP HCCA
BP GO:0032366 intracellular sterol transport IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 185 231
IPR002885 Pentatricopeptide_repeat 388 435
IPR002885 Pentatricopeptide_repeat 82 129
IPR002885 Pentatricopeptide_repeat 286 333
IPR002885 Pentatricopeptide_repeat 592 638
IPR002885 Pentatricopeptide_repeat 489 536
IPR002885 Pentatricopeptide_repeat 261 283
No external refs found!