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  5. Sacu_v1.1_s0056.g014563

Sacu_v1.1_s0056.g014563 (SRO1)


Aliases : SRO1

Description : organellar-signalling mediator *(RCD1) & original description: CDS=1036-3015


Gene families : OG0000733 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000733_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0056.g014563

Target Alias Description ECC score Gene Family Method Actions
Adi_g060192 SRO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g065990 SRO1 organellar-signalling mediator *(RCD1) & original... 0.03 OrthoFinder output from all 47 species
Adi_g085807 SRO2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08224 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aop_g11358 AtRCD1, RCD1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g27125 SRO1 organellar-signalling mediator *(RCD1) & original... 0.03 OrthoFinder output from all 47 species
Dac_g12827 SRO5 organellar-signalling mediator *(RCD1) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g22889 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g02762 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g06687 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g29371 No alias organellar-signalling mediator *(RCD1) & original... 0.04 OrthoFinder output from all 47 species
Tin_g07052 AtRCD1, RCD1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08708 AtRCD1, RCD1,... organellar-signalling mediator *(RCD1) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
InterPro domains Description Start Stop
IPR012317 Poly(ADP-ribose)pol_cat_dom 339 434
IPR004170 WWE-dom 132 186
IPR022003 RST 544 608
No external refs found!