1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0060.g015239

Sacu_v1.1_s0060.g015239


Description : not classified & original description: CDS=1-2529


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0060.g015239
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT3G61170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g004703 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g014360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035543 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18190 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03394 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27901 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27919 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28193 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene45795.t1 Aspi01Gene45795 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0070.g036726 REME1 not classified & original description: CDS=1-1386 0.02 OrthoFinder output from all 47 species
Ceric.29G070800.1 Ceric.29G070800 not classified & original description: pacid=50625555... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.200 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g23468 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g06287 CRR2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g28641 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g19510 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01021576001 BRCA1, ATBRCA1 DNA damage response.BRCA1–BARD1 DNA-damage response... 0.03 OrthoFinder output from all 47 species
GSVIVT01023818001 CRR28 Pentatricopeptide repeat-containing protein At4g21065... 0.01 OrthoFinder output from all 47 species
LOC_Os10g39460.2 LOC_Os10g39460 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g04288 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33311 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27740 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g30106 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g04191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g52997 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g03385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo78092 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Smo98551 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006749 glutathione metabolic process IEP HCCA
BP GO:0006751 glutathione catabolic process IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
BP GO:0007265 Ras protein signal transduction IEP HCCA
BP GO:0007266 Rho protein signal transduction IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016842 amidine-lyase activity IEP HCCA
BP GO:0042219 cellular modified amino acid catabolic process IEP HCCA
BP GO:0043171 peptide catabolic process IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 281 310
IPR002885 Pentatricopeptide_repeat 353 374
IPR002885 Pentatricopeptide_repeat 581 610
IPR002885 Pentatricopeptide_repeat 654 680
IPR002885 Pentatricopeptide_repeat 250 277
IPR002885 Pentatricopeptide_repeat 379 409
IPR002885 Pentatricopeptide_repeat 683 709
IPR002885 Pentatricopeptide_repeat 480 509
IPR002885 Pentatricopeptide_repeat 152 175
IPR002885 Pentatricopeptide_repeat 78 124
IPR002885 Pentatricopeptide_repeat 177 226
No external refs found!