Aliases : MSL5
Description : mechanosensitive ion channel *(MSL) & original description: CDS=155-3313
Gene families : OG0000689 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000689_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sacu_v1.1_s0061.g015319 | |
| Cluster | HCCA: Cluster_48 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G12080 | MSL10, ATMSL10 | mechanosensitive channel of small conductance-like 10 | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g09653 | No alias | mechanosensitive ion channel *(MSL) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene38455.t1 | MSL5, Aspi01Gene38455 | mechanosensitive ion channel *(MSL) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Azfi_s0005.g009367 | MSL6 | mechanosensitive ion channel *(MSL) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.02G100600.1 | MSL6, Ceric.02G100600 | mechanosensitive ion channel *(MSL) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.22G069800.1 | MSL5, Ceric.22G069800 | mechanosensitive ion channel *(MSL) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g12993 | MSL6 | mechanosensitive ion channel *(MSL) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g27378 | MSL5 | mechanosensitive ion channel *(MSL) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01015113001 | MSL10, ATMSL10 | Solute transport.channels.MSL mechanosensitive ion channel | 0.02 | OrthoFinder output from all 47 species | |
| Len_g00684 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g24056 | MSL5 | mechanosensitive ion channel *(MSL) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g28112 | MSL6 | mechanosensitive ion channel *(MSL) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0013.g005804 | MSL6 | mechanosensitive ion channel *(MSL) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g47206 | No alias | mechanosensitive ion channel *(MSL) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc08g061980.4.1 | MSL10, ATMSL10,... | mechanosensitive ion channel (MSL) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g10758 | MSL4 | mechanosensitive ion channel *(MSL) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g11582 | MSL4 | mechanosensitive ion channel *(MSL) & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0016020 | membrane | IEA | Interproscan |
| BP | GO:0055085 | transmembrane transport | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0005507 | copper ion binding | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0009719 | response to endogenous stimulus | IEP | HCCA |
| BP | GO:0009725 | response to hormone | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010033 | response to organic substance | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0019842 | vitamin binding | IEP | HCCA |
| BP | GO:0030001 | metal ion transport | IEP | HCCA |
| MF | GO:0030170 | pyridoxal phosphate binding | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0042221 | response to chemical | IEP | HCCA |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| MF | GO:0070279 | vitamin B6 binding | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR006685 | MscS_channel | 804 | 1003 |
| No external refs found! |
