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  5. Sacu_v1.1_s0062.g015486

Sacu_v1.1_s0062.g015486


Description : not classified & original description: CDS=1-1653


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0062.g015486

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00240430 OSB3,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
AT1G53600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g075673 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17514 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28661 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37332 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37342 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05069 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07674 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g19459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33568 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g37757 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g67898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g69562 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023921 No alias not classified & original description: CDS=1-2157 0.01 OrthoFinder output from all 47 species
Azfi_s1596.g104539 No alias not classified & original description: CDS=111-3779 0.01 OrthoFinder output from all 47 species
Cba_g00281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35153 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45029 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75327 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G121800.1 Ceric.01G121800 not classified & original description: pacid=50593016... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g07768 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17280 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g41263 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19916 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g43430.2 LOC_Os04g43430 RNA editing factor (MEF12) 0.02 OrthoFinder output from all 47 species
Len_g08485 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g38083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44793 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g48594 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13951 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19044 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g01662 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15455 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g07515 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53969 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30277 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004357 glutamate-cysteine ligase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 169 216
IPR002885 Pentatricopeptide_repeat 374 421
IPR002885 Pentatricopeptide_repeat 272 319
IPR002885 Pentatricopeptide_repeat 74 99
IPR002885 Pentatricopeptide_repeat 246 268
IPR002885 Pentatricopeptide_repeat 348 370
IPR002885 Pentatricopeptide_repeat 449 471
No external refs found!