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  5. Sacu_v1.1_s0066.g016184

Sacu_v1.1_s0066.g016184


Description : not classified & original description: CDS=189-5282


Gene families : OG0002960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002960_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0066.g016184

Target Alias Description ECC score Gene Family Method Actions
Adi_g107387 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35642 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18903 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g12067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434824g0010 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g47722 No alias component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003689 DNA clamp loader activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
CC GO:0009360 DNA polymerase III complex IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009584 detection of visible light IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 16 49
IPR001680 WD40_repeat 97 132
IPR001680 WD40_repeat 56 91
IPR001680 WD40_repeat 138 174
IPR002083 MATH/TRAF_dom 96 218
IPR002083 MATH/TRAF_dom 588 699
IPR002083 MATH/TRAF_dom 447 544
No external refs found!