Sacu_v1.1_s0071.g016835 (HRT, RCY1, RPP8)

Aliases : HRT, RCY1, RPP8

Description : not classified & original description: CDS=1-2136

Gene families : OG0000474 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000474_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0071.g016835
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
Aob_g14067	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g22702	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene02699.t1	Aspi01Gene02699	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g06808	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g11302	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g26533	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g61884	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g77108	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g13636	LOV1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g26291	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g02428	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g36066	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g39652	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g06973	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g30962	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g31200	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
CC	GO:0035145	exon-exon junction complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	341	557

External Links

No external refs found!

Sacu_v1.1_s0071.g016835 (HRT, RCY1, RPP8)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation