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  5. Sacu_v1.1_s0075.g017370

Sacu_v1.1_s0075.g017370


Description : not classified & original description: CDS=72-2741


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0075.g017370
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00076010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Adi_g004274 LPA66 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023975 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g097219 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g02126 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17512 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g06335 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07519 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17866 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19283 CRR2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24134 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30855 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08796 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27600 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28217 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05734 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09162 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g39235 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g70480 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01194.t1 Aspi01Gene01194 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene50522.t1 Aspi01Gene50522 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042642 No alias not classified & original description: CDS=39-695 0.01 OrthoFinder output from all 47 species
Azfi_s0270.g061187 No alias not classified & original description: CDS=1-3441 0.01 OrthoFinder output from all 47 species
Cba_g26721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35192 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.01 OrthoFinder output from all 47 species
Dac_g04265 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g18413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g19095 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g45717 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07101 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17068 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g22451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09596 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008721001 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.01 OrthoFinder output from all 47 species
GSVIVT01029252001 PTAC9, OSB2 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
GSVIVT01029254001 OSB4 RNA biosynthesis.organelle machineries.RNA polymerase... 0.01 OrthoFinder output from all 47 species
LOC_Os03g38580.1 EMB2261, LOC_Os03g38580 Pentatricopeptide repeat-containing protein At3g24000,... 0.01 OrthoFinder output from all 47 species
LOC_Os04g02850.1 OTP84, LOC_Os04g02850 RNA editing factor (OTP84) 0.02 OrthoFinder output from all 47 species
Len_g12221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13064 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18533 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07754 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g15171 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28793 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23751 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g13676 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g31815 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05208 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06358 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12193 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18431 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18601 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29289 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g45354 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g58117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61143 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51766 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g016540.2.1 Solyc04g016540 Pentatricopeptide repeat-containing protein At2g39620... 0.01 OrthoFinder output from all 47 species
Solyc04g082870.1.1 Solyc04g082870 Pentatricopeptide repeat-containing protein At1g25360... 0.02 OrthoFinder output from all 47 species
Spa_g00965 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g10134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53489 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g34663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0008535 respiratory chain complex IV assembly IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
BP GO:0033617 mitochondrial cytochrome c oxidase assembly IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 699 761
IPR032867 DYW_dom 797 886
IPR002885 Pentatricopeptide_repeat 483 529
IPR002885 Pentatricopeptide_repeat 280 328
IPR002885 Pentatricopeptide_repeat 381 428
IPR002885 Pentatricopeptide_repeat 587 631
IPR002885 Pentatricopeptide_repeat 356 378
IPR002885 Pentatricopeptide_repeat 557 583
No external refs found!