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  5. Sacu_v1.1_s0081.g018052

Sacu_v1.1_s0081.g018052


Description : regulatory protein *(SUO) of miRNA biogenesis pathway & original description: CDS=764-5473


Gene families : OG0000514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000514_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0081.g018052

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00111920 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT3G48050 No alias BAH domain ;TFIIS helical bundle-like domain 0.08 OrthoFinder output from all 47 species
AT3G48060 No alias BAH domain ;TFIIS helical bundle-like domain 0.07 OrthoFinder output from all 47 species
AT4G24200 No alias Transcription elongation factor (TFIIS) family protein 0.03 OrthoFinder output from all 47 species
Adi_g005148 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g097046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46582 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Aev_g47750 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Ala_g20600 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Als_g18826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33736 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Aob_g02378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03624 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.06 OrthoFinder output from all 47 species
Aob_g17691 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Azfi_s0100.g044240 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Azfi_s0124.g048462 No alias not classified & original description: CDS=36-3404 0.04 OrthoFinder output from all 47 species
Cba_g14471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20508 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G080100.1 Ceric.04G080100 not classified & original description: pacid=50631023... 0.03 OrthoFinder output from all 47 species
Ceric.24G078000.1 Ceric.24G078000 regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001215.1 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g15540 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Ehy_g00900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15177 No alias PSY precursor polypeptide & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18043 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31579 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007806001 No alias No description available 0.08 OrthoFinder output from all 47 species
GSVIVT01024041001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01032521001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_02775 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_05084 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_05690 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Gb_20760 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g11454 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
MA_10428034g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10432920g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_39143g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_39143g0020 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_710118g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp4g16160.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g15696 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Nbi_g04481 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Ore_g00447 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25799 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Pir_g06454 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.05 OrthoFinder output from all 47 species
Pir_g13634 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Pir_g16607 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g31632 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41929 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Ppi_g56304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g04139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g04915 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g29218 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Sam_g36177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo440870 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc03g114060.3.1 Solyc03g114060 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Solyc06g071350.4.1 Solyc06g071350 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Solyc12g089320.3.1 Solyc12g089320 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Spa_g54442 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13966 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Tin_g13967 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Zm00001e002441_P003 Zm00001e002441 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e013353_P001 Zm00001e013353 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e037792_P001 Zm00001e037792 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e037793_P001 Zm00001e037793 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR001025 BAH_dom 43 151
IPR017923 TFIIS_N 353 402
No external refs found!