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  5. Sacu_v1.1_s0085.g018363

Sacu_v1.1_s0085.g018363


Description : not classified & original description: CDS=1-1818


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0085.g018363
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Adi_g005534 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g049842 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g07273 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g21644 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16432 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g22271 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36543 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g05010 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g04000 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04440 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28388 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g36004 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g59712 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g67496 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0010.g012371 No alias ssDNA-binding protein *(OSB) & original description: CDS=115-528 0.07 OrthoFinder output from all 47 species
Azfi_s0020.g015372 OTP86 not classified & original description: CDS=1-2592 0.06 OrthoFinder output from all 47 species
Azfi_s0093.g043166 No alias not classified & original description: CDS=1-1980 0.04 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.06 OrthoFinder output from all 47 species
Azfi_s1721.g106134 CRR22 not classified & original description: CDS=1-1431 0.06 OrthoFinder output from all 47 species
Cba_g06947 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g07061 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g07394 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g36071 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g77637 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G038000.1 Ceric.04G038000 not classified & original description: pacid=50632532... 0.06 OrthoFinder output from all 47 species
Ceric.07G091600.1 Ceric.07G091600 not classified & original description: pacid=50627346... 0.03 OrthoFinder output from all 47 species
Ceric.12G018600.1 Ceric.12G018600 not classified & original description: pacid=50602205... 0.05 OrthoFinder output from all 47 species
Ceric.24G028500.1 Ceric.24G028500 not classified & original description: pacid=50629587... 0.05 OrthoFinder output from all 47 species
Dcu_g08608 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g09988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18296 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54667 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g07379 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g15850 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g17711 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g17712 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g26512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g33669 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41092 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41375 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g43134 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g32051 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g32191 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38653 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26218 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30620 OTP82 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pp3c17_4940V3.1 Pp3c17_4940 organellar single-stranded DNA binding protein 3 0.01 OrthoFinder output from all 47 species
Ppi_g13349 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g16487 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007167 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-3162 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008680 No alias not classified & original description: CDS=1-2187 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014767 OTP84 not classified & original description: CDS=399-2006 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017091 No alias not classified & original description: CDS=1-3111 0.03 OrthoFinder output from all 47 species
Solyc02g065410.3.1 CRR22, Solyc02g065410 Pentatricopeptide repeat-containing protein At1g20230... 0.05 OrthoFinder output from all 47 species
Solyc03g114660.1.1 Solyc03g114660 Pentatricopeptide repeat-containing protein At1g18485... 0.05 OrthoFinder output from all 47 species
Solyc06g068810.4.1 Solyc06g068810 Pentatricopeptide repeat-containing protein At5g50990... 0.04 OrthoFinder output from all 47 species
Solyc07g009220.2.1 Solyc07g009220 Pentatricopeptide repeat-containing protein At2g34400... 0.06 OrthoFinder output from all 47 species
Spa_g25363 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g05669 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g20089 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g26897 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g44042 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 265 289
IPR002885 Pentatricopeptide_repeat 367 391
IPR002885 Pentatricopeptide_repeat 396 423
IPR002885 Pentatricopeptide_repeat 194 221
IPR002885 Pentatricopeptide_repeat 291 338
IPR002885 Pentatricopeptide_repeat 90 137
No external refs found!