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  5. Sacu_v1.1_s0092.g018968

Sacu_v1.1_s0092.g018968


Description : bHLH-type transcription factor & original description: CDS=1-675


Gene families : OG0000484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0092.g018968

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00182780 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT2G37950 No alias RING/FYVE/PHD zinc finger superfamily protein 0.01 OrthoFinder output from all 47 species
AT3G09760 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G01070 No alias RING/FYVE/PHD zinc finger superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g31446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20863 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15074 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g69418 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.15G009300.1 Ceric.15G009300 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g16777 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g08355 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01025179001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_16779 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_20192 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10436661g0020 No alias RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_171376g0010 No alias RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_352312g0010 No alias RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Pir_g26175 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g48723 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g044780.3.1 Solyc07g044780 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Tin_g02444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g42112 No alias E3 ubiquiTin ligase & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 107 156
IPR011598 bHLH_dom 463 508
IPR025610 MYC/MYB_N 89 279
No external refs found!