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  5. Sacu_v1.1_s0095.g019261

Sacu_v1.1_s0095.g019261


Description : not classified & original description: CDS=1-3048


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0095.g019261

Target Alias Description ECC score Gene Family Method Actions
Aev_g20856 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g18491 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g30878 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g35743 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g06397 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19294 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03649 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g23956 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g27035 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g68065 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.06 OrthoFinder output from all 47 species
Cba_g20476 MEF22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20670 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67785 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g73866 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G103900.1 Ceric.04G103900 ssDNA-binding protein *(OSB) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.09G023600.1 Ceric.09G023600 not classified & original description: pacid=50587368... 0.05 OrthoFinder output from all 47 species
Ceric.19G003900.1 Ceric.19G003900 not classified & original description: pacid=50575192... 0.02 OrthoFinder output from all 47 species
Ceric.31G069700.1 CRR21, Ceric.31G069700 not classified & original description: pacid=50574812... 0.05 OrthoFinder output from all 47 species
Ceric.33G060200.1 Ceric.33G060200 not classified & original description: pacid=50607485... 0.03 OrthoFinder output from all 47 species
Dcu_g08714 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45907 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g28079 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g19239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_31111 EMB2758 Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
LOC_Os03g43420.1 OSB1, LOC_Os03g43420 ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Len_g04309 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18565 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18996 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_9360929g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Nbi_g15560 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15845 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g04779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10372 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27667 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13229 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g23074 LPA66 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06887 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g09327 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g35953 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39360 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53555 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g62708 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g14924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24503 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38738 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g071370.1.1 PDE247, CLB19,... RNA editing factor (CLB19) 0.04 OrthoFinder output from all 47 species
Spa_g15123 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g16206 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g07561 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e008183_P001 Zm00001e008183 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e029819_P003 CRR22, Zm00001e029819 RNA editing factor (CRR22) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 938 958
IPR002885 Pentatricopeptide_repeat 726 756
IPR002885 Pentatricopeptide_repeat 395 418
IPR002885 Pentatricopeptide_repeat 698 720
IPR002885 Pentatricopeptide_repeat 524 547
IPR002885 Pentatricopeptide_repeat 865 910
IPR002885 Pentatricopeptide_repeat 758 805
IPR002885 Pentatricopeptide_repeat 218 264
IPR002885 Pentatricopeptide_repeat 622 669
IPR002885 Pentatricopeptide_repeat 421 468
IPR002885 Pentatricopeptide_repeat 319 357
No external refs found!