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  5. Sacu_v1.1_s0097.g019430

Sacu_v1.1_s0097.g019430


Description : not classified & original description: CDS=1-4416


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0097.g019430

Target Alias Description ECC score Gene Family Method Actions
AT2G36980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G49740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G62890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005730 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035455 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g040866 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g34516 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33929 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g36010 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30595 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g47255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27260 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32957 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g36878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37980 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g20195 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g65854 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene06316.t1 Aspi01Gene06316 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene23581.t1 Aspi01Gene23581 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36110.t1 CRR22, Aspi01Gene36110 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023864 No alias not classified & original description: CDS=1-2211 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042650 No alias not classified & original description: CDS=1-1848 0.03 OrthoFinder output from all 47 species
Azfi_s0215.g058372 No alias not classified & original description: CDS=1-2739 0.03 OrthoFinder output from all 47 species
Azfi_s0583.g078513 No alias not classified & original description: CDS=1-2793 0.03 OrthoFinder output from all 47 species
Cba_g06580 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07735 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75118 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G044100.1 RARE1, Ceric.07G044100 not classified & original description: pacid=50626680... 0.03 OrthoFinder output from all 47 species
Ceric.09G069300.1 OTP86, Ceric.09G069300 not classified & original description: pacid=50588354... 0.02 OrthoFinder output from all 47 species
Ceric.11G080200.1 Ceric.11G080200 not classified & original description: pacid=50595969... 0.02 OrthoFinder output from all 47 species
Ceric.34G048600.1 Ceric.34G048600 not classified & original description: pacid=50623562... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.28 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g35673 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05661 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08760 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g09752 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g31630 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03842 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g04453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18372 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46744 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os09g34870.1 LOC_Os09g34870 Pentatricopeptide repeat-containing protein At2g36980,... 0.01 OrthoFinder output from all 47 species
Len_g17579 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18574 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g40700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g26486 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g33801 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g37758 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g41373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g45879 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05745 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g37271 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41304 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43227 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44362 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63652 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27231 No alias cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.02 OrthoFinder output from all 47 species
Sam_g29286 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo30095 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Solyc02g079380.2.1 CRR22, Solyc02g079380 RNA editing factor (CRR22) 0.02 OrthoFinder output from all 47 species
Solyc06g005690.3.1 Solyc06g005690 Pentatricopeptide repeat-containing protein At5g59600... 0.01 OrthoFinder output from all 47 species
Spa_g04723 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21674 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g26778 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e000621_P001 CRR22, Zm00001e000621 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
Zm00001e034478_P001 Zm00001e034478 Pentatricopeptide repeat-containing protein At3g24000,... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004019 adenylosuccinate synthase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 832 878
IPR002885 Pentatricopeptide_repeat 315 361
IPR002885 Pentatricopeptide_repeat 1115 1162
IPR002885 Pentatricopeptide_repeat 213 259
IPR002885 Pentatricopeptide_repeat 415 462
IPR002885 Pentatricopeptide_repeat 289 310
IPR002885 Pentatricopeptide_repeat 906 932
IPR002885 Pentatricopeptide_repeat 1019 1046
IPR002885 Pentatricopeptide_repeat 690 710
IPR002885 Pentatricopeptide_repeat 718 744
IPR002885 Pentatricopeptide_repeat 589 612
IPR002885 Pentatricopeptide_repeat 934 964
IPR002885 Pentatricopeptide_repeat 618 646
No external refs found!