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  5. Sacu_v1.1_s0099.g019577

Sacu_v1.1_s0099.g019577


Description : not classified & original description: CDS=1-2622


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0099.g019577
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00048330 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g53360,... 0.03 OrthoFinder output from all 47 species
AMTR_s00587p00011650 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AT3G47840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G49710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g036420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g089353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14142 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33568 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28051.t3 Aspi01Gene28051 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34731.t1 Aspi01Gene34731 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34785.t1 Aspi01Gene34785 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene36332.t1 Aspi01Gene36332 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64841.t1 Aspi01Gene64841 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g008059 No alias not classified & original description: CDS=1-504 0.02 OrthoFinder output from all 47 species
Cba_g06233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G087600.1 OTP84, Ceric.11G087600 not classified & original description: pacid=50595872... 0.05 OrthoFinder output from all 47 species
Dac_g03810 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g39198 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08946 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03570 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16109 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17701 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g18446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003766001 LPA66 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Len_g07721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06165 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06599 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06683 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07097 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11799 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25864 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32914 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g19707 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g17174 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18756 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23480 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57521 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65182 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18089 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g40990 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59338 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004758 No alias not classified & original description: CDS=1-2223 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019330 No alias not classified & original description: CDS=1-2295 0.03 OrthoFinder output from all 47 species
Spa_g45537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g44081 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 808 832
IPR002885 Pentatricopeptide_repeat 710 729
IPR002885 Pentatricopeptide_repeat 535 564
IPR002885 Pentatricopeptide_repeat 608 630
IPR002885 Pentatricopeptide_repeat 509 531
IPR002885 Pentatricopeptide_repeat 634 681
IPR002885 Pentatricopeptide_repeat 357 405
IPR002885 Pentatricopeptide_repeat 152 201
IPR002885 Pentatricopeptide_repeat 734 783
IPR002885 Pentatricopeptide_repeat 256 303
No external refs found!