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  5. Sacu_v1.1_s0101.g019840

Sacu_v1.1_s0101.g019840


Description : not classified & original description: CDS=144-2663


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0101.g019840
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00266930 OTP81 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
AT1G31430 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G35030 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G14850 LOI1, MEF11 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G40405 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G50990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g018203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035612 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069053 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099248 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25949 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19046 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g56508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g14037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0283.g063049 OTP86 ssDNA-binding protein *(OSB) & original description: CDS=1-2283 0.03 OrthoFinder output from all 47 species
Azfi_s0312.g064188 No alias not classified & original description: CDS=1-2817 0.04 OrthoFinder output from all 47 species
Cba_g04675 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05246 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g07730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14131 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16998 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19054 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19911 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g26042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29381 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G006100.1 Ceric.14G006100 not classified & original description: pacid=50634395... 0.03 OrthoFinder output from all 47 species
Ceric.14G013000.1 Ceric.14G013000 not classified & original description: pacid=50634838... 0.03 OrthoFinder output from all 47 species
Dac_g07040 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33204 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g44494 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21829 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29998 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033872001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g32620.1 LOC_Os03g32620 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os04g43430.2 LOC_Os04g43430 RNA editing factor (MEF12) 0.03 OrthoFinder output from all 47 species
LOC_Os05g24150.1 LOC_Os05g24150 Pentatricopeptide repeat-containing protein At2g34400... 0.02 OrthoFinder output from all 47 species
LOC_Os06g02200.1 CRR22, LOC_Os06g02200 RNA editing factor (CRR22) 0.04 OrthoFinder output from all 47 species
Len_g18069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18856 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39239 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43142 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44143 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15833 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08728 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09072 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g090440.1.1 LPA66, Solyc09g090440 Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
Spa_g08436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05893 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06283 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17876 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22908 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g32426 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0051879 Hsp90 protein binding IEP HCCA
CC GO:0070939 Dsl1/NZR complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 134 156
IPR002885 Pentatricopeptide_repeat 465 513
IPR002885 Pentatricopeptide_repeat 262 308
IPR002885 Pentatricopeptide_repeat 160 206
IPR002885 Pentatricopeptide_repeat 568 614
IPR002885 Pentatricopeptide_repeat 364 410
IPR002885 Pentatricopeptide_repeat 670 717
No external refs found!