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  5. Sacu_v1.1_s0104.g020118

Sacu_v1.1_s0104.g020118


Description : pectin methylesterase & original description: CDS=358-1632


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0104.g020118
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AT5G26810 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g16111 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20976 QRT1 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g40489 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07065 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g12395 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34624 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.13G037100.1 Ceric.13G037100 not classified & original description: pacid=50635930... 0.02 OrthoFinder output from all 47 species
Ehy_g12393 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15223 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01023786001 ATPE11, PE11 Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
LOC_Os05g44600.1 LOC_Os05g44600 pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_10267810g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp4g01190.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Ore_g26499 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g091730.4.1 Solyc09g091730 pectin methylesterase 0.01 OrthoFinder output from all 47 species
Tin_g20073 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 81 329
No external refs found!