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  5. Sacu_v1.1_s0109.g020568

Sacu_v1.1_s0109.g020568 (PUB13, ATPUB13)


Aliases : PUB13, ATPUB13

Description : E3 ubiquitin ligase & original description: CDS=347-2224


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0109.g020568

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00030110 PUB15,... U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00025p00052670 PUB13, ATPUB13,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00072p00171260 PUB14, ATPUB14,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT1G29340 ATPUB17, PUB17 plant U-box 17 0.03 OrthoFinder output from all 47 species
AT5G42340 PUB15 Plant U-Box 15 0.03 OrthoFinder output from all 47 species
Adi_g009234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057743 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057744 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05159 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03476 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000295 No alias not classified & original description: CDS=1-2304 0.05 OrthoFinder output from all 47 species
Azfi_s0011.g012763 PUB12, AtPUB12 not classified & original description: CDS=1-549 0.01 OrthoFinder output from all 47 species
Azfi_s0292.g063403 No alias not classified & original description: CDS=1-2253 0.02 OrthoFinder output from all 47 species
Cba_g64942 PUB12, AtPUB12 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.07G010000.1 PUB13, ATPUB13,... E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g01449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04978 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06164 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17103 PUB13, ATPUB13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009347001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01016225001 PUB14, ATPUB14 U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_10627 PUB8, B80 U-box domain-containing protein 13 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os02g28720.1 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g16824.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os06g01304.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.07 OrthoFinder output from all 47 species
LOC_Os12g38210.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Len_g03070 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14585 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
MA_212555g0010 PUB13, ATPUB13 U-box domain-containing protein 12 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Msp_g09964 PUB18, ATPUB18 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g33829 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11795 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g096460.2.1 Solyc01g096460 U-box domain-containing protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc05g008230.3.1 Solyc05g008230 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Solyc09g018230.1.1 Solyc09g018230 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc11g008390.2.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Solyc12g094610.3.1 PUB15, Solyc12g094610 U-box domain-containing protein 15 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g12131 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01104 No alias E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07352 ATPUB17, PUB17 E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14575 PUB18, ATPUB18 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21993 PUB13, ATPUB13 E3 ubiquiTin ligase *(PUB15) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002954_P001 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Zm00001e013323_P001 PUB15, Zm00001e013323 U-box domain-containing protein 15 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e014566_P002 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Zm00001e034012_P001 Zm00001e034012 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Zm00001e035415_P001 Zm00001e035415 U-box domain-containing protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 402 441
IPR000225 Armadillo 485 523
IPR000225 Armadillo 567 605
IPR003613 Ubox_domain 287 357
No external refs found!