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  5. Sacu_v1.1_s0109.g020572

Sacu_v1.1_s0109.g020572 (RAP2.2)


Aliases : RAP2.2

Description : transcription factor component *(HRE/RAP2.12) of oxygen-sensor activity & original description: CDS=463-1932


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0109.g020572
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00268280 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00095120 ERF110,... Ethylene-responsive transcription factor ERF110... 0.03 OrthoFinder output from all 47 species
AT1G12610 DDF1 Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G75490 No alias Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G23240 ERF1, ATERF1 ethylene response factor 1 0.03 OrthoFinder output from all 47 species
AT4G16750 No alias Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G18450 No alias Integrase-type DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G44210 ATERF-9, ERF9, ATERF9 erf domain protein 9 0.01 OrthoFinder output from all 47 species
AT5G47220 ERF2, ATERF2, ATERF-2 ethylene responsive element binding factor 2 0.04 OrthoFinder output from all 47 species
Adi_g021379 ERF72, EBP, ATEBP, RAP2.3 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Als_g36635 ERF72, EBP, ATEBP, RAP2.3 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Aspi01Gene07634.t1 Aspi01Gene07634 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23221.t1 Aspi01Gene23221 subgroup ERF-I transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49926.t1 ATERF12, ERF12,... subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene56619.t1 RAP2.1, Aspi01Gene56619 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g11545 RAP2.12 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Cre08.g364400 RAP2.2 No description available 0.01 OrthoFinder output from all 47 species
Dde_g06699 Rap2.6L not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08064 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os01g73770.1 CBF4, DREB1D,... transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
LOC_Os02g10760.1 WIN1, SHN1,... transcription factor (ERF). SHN-type cutin and suberin... 0.02 OrthoFinder output from all 47 species
LOC_Os06g07030.1 RAP2.9, DEAR5,... transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
LOC_Os06g09390.1 RAP2.12, LOC_Os06g09390 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os06g11860.1 RAP2.4, LOC_Os06g11860 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
LOC_Os08g45110.1 LOC_Os08g45110 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Lfl_g03871 RAP2.2 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
MA_10209922g0010 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_84578g0010 HRE1 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
MA_8552524g0010 ERF-1, ATERF-1 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
MA_9068995g0010 No alias Ethylene-responsive transcription factor ERF016... 0.01 OrthoFinder output from all 47 species
Mp5g01050.1 No alias transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Msp_g04749 ERF7, ATERF7, ATERF-7 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ore_g07819 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ore_g10934 ATERF-9, ERF9, ATERF9 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ore_g32986 No alias subgroup ERF-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09597 CRF4 subgroup ERF-VI transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g25584 DREB26 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g28144 DDF1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g43460 DREB26 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g16792 RAP2.12 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Ppi_g56408 DREB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g050750.2.1 Solyc04g050750 transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Spa_g52172 TINY2 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Spa_g56350 No alias subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Zm00001e002789_P001 RAP2.4, Zm00001e002789 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e007351_P001 ERF-6-6, ERF6,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e016064_P001 RAP2.2, Zm00001e016064 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e036260_P001 RAP2.12, Zm00001e036260 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0004629 phospholipase C activity IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 91 139
No external refs found!