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  5. Sacu_v1.1_s0111.g020713

Sacu_v1.1_s0111.g020713


Description : not classified & original description: CDS=1-3843


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0111.g020713
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00257350 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00014p00090010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00235510 OTP84,... Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.07 OrthoFinder output from all 47 species
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT2G33760 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G40410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G61400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005730 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g036720 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g103876 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g09730 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g22656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g36953 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04425 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05916 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08949 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g10709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02588 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09092 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20429 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33229 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36807 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g43404 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene14074.t1 CRR22, Aspi01Gene14074 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene14256.t1 Aspi01Gene14256 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene45825.t1 Aspi01Gene45825 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000442 No alias not classified & original description: CDS=1-3240 0.04 OrthoFinder output from all 47 species
Azfi_s0005.g008963 No alias not classified & original description: CDS=1-2157 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015640 No alias not classified & original description: CDS=1-1965 0.05 OrthoFinder output from all 47 species
Azfi_s0027.g023504 No alias not classified & original description: CDS=132-2867 0.04 OrthoFinder output from all 47 species
Azfi_s0036.g025743 No alias not classified & original description: CDS=1-2553 0.03 OrthoFinder output from all 47 species
Azfi_s0125.g048584 CRR22 not classified & original description: CDS=1-1611 0.04 OrthoFinder output from all 47 species
Azfi_s0544.g076391 No alias not classified & original description: CDS=1-906 0.04 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.03 OrthoFinder output from all 47 species
Cba_g05154 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05301 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05567 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07181 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07684 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07780 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g19394 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20780 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g31307 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G053600.1 Ceric.01G053600 not classified & original description: pacid=50592089... 0.04 OrthoFinder output from all 47 species
Ceric.11G086200.1 OTP84, Ceric.11G086200 not classified & original description: pacid=50595902... 0.03 OrthoFinder output from all 47 species
Ceric.13G082600.1 Ceric.13G082600 not classified & original description: pacid=50636923... 0.03 OrthoFinder output from all 47 species
Ceric.1Z005100.1 Ceric.1Z005100 not classified & original description: pacid=50567700... 0.03 OrthoFinder output from all 47 species
Ceric.21G004000.1 Ceric.21G004000 not classified & original description: pacid=50604228... 0.03 OrthoFinder output from all 47 species
Ceric.26G058400.1 VAC1, ECB2,... not classified & original description: pacid=50598871... 0.03 OrthoFinder output from all 47 species
Ceric.36G058400.1 Ceric.36G058400 not classified & original description: pacid=50568396... 0.04 OrthoFinder output from all 47 species
Ceric.39G011500.1 Ceric.39G011500 not classified & original description: pacid=50582697... 0.02 OrthoFinder output from all 47 species
Dac_g22405 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g42980 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g14626 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16812 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g33764 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g36025 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45110 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47861 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g05108 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22173 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22354 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22610 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g23845 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g24665 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28218 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_11688 CRR2 OTP70 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os01g60430.1 LOC_Os01g60430 RNA editing factor (MEF10) 0.03 OrthoFinder output from all 47 species
LOC_Os01g62910.1 CRR2, LOC_Os01g62910 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Len_g04342 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18045 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54485 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02262 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08093 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g22099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_482767g0010 OTP84 Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
MA_9463538g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
Msp_g14847 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g16922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20337 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g22117 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g23751 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g03036 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32537 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07615 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12921 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14900 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g16080 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g36012 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g48074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55034 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003527 EMB2758 not classified & original description: CDS=1-1284 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008810 No alias not classified & original description: CDS=1-1683 0.05 OrthoFinder output from all 47 species
Sam_g19471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24177 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g24540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g34092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48312 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo134463 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Solyc06g048900.1.1 Solyc06g048900 Pentatricopeptide repeat-containing protein At2g40720... 0.05 OrthoFinder output from all 47 species
Solyc09g007430.1.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species
Spa_g14323 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g05462 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g25311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g32449 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g43830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010837_P001 LPA66, Zm00001e010837 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species
Zm00001e016923_P001 CRR2, Zm00001e016923 Pentatricopeptide repeat-containing protein At3g46790,... 0.04 OrthoFinder output from all 47 species
Zm00001e022858_P001 Zm00001e022858 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.03 OrthoFinder output from all 47 species
Zm00001e029450_P001 Zm00001e029450 Pentatricopeptide repeat-containing protein At2g46050,... 0.03 OrthoFinder output from all 47 species
Zm00001e030887_P001 Zm00001e030887 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 809 838
IPR002885 Pentatricopeptide_repeat 1012 1041
IPR002885 Pentatricopeptide_repeat 301 329
IPR002885 Pentatricopeptide_repeat 604 634
IPR002885 Pentatricopeptide_repeat 1086 1106
IPR002885 Pentatricopeptide_repeat 882 905
IPR002885 Pentatricopeptide_repeat 96 122
IPR002885 Pentatricopeptide_repeat 576 601
IPR002885 Pentatricopeptide_repeat 984 1009
IPR002885 Pentatricopeptide_repeat 170 193
IPR002885 Pentatricopeptide_repeat 398 446
IPR002885 Pentatricopeptide_repeat 908 955
IPR002885 Pentatricopeptide_repeat 501 548
IPR002885 Pentatricopeptide_repeat 1112 1156
IPR002885 Pentatricopeptide_repeat 196 243
IPR002885 Pentatricopeptide_repeat 703 750
No external refs found!