Sacu_v1.1_s0120.g021374


Description : not classified & original description: CDS=1-1881


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0120.g021374

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00246970 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.02 OrthoFinder output from all 47 species
AT2G21090 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g097993 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g113540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12351 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20987 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18999 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g30090 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09005 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g21675 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27882 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27891 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29475 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29803 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08796 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene06316.t1 Aspi01Gene06316 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40442.t1 Aspi01Gene40442 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65595.t1 Aspi01Gene65595 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71053.t1 EMB2261, Aspi01Gene71053 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007441 No alias not classified & original description: CDS=1-1959 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008511 No alias not classified & original description: CDS=1-792 0.01 OrthoFinder output from all 47 species
Azfi_s0004.g008858 No alias not classified & original description: CDS=1-2760 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023799 No alias not classified & original description: CDS=1-1911 0.02 OrthoFinder output from all 47 species
Azfi_s0043.g027128 No alias not classified & original description: CDS=146-1684 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035815 No alias not classified & original description: CDS=1-2163 0.01 OrthoFinder output from all 47 species
Azfi_s0084.g039082 No alias not classified & original description: CDS=1-2637 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042642 No alias not classified & original description: CDS=39-695 0.01 OrthoFinder output from all 47 species
Azfi_s0130.g049076 No alias not classified & original description: CDS=1-1890 0.03 OrthoFinder output from all 47 species
Azfi_s0171.g055668 No alias not classified & original description: CDS=1-711 0.03 OrthoFinder output from all 47 species
Azfi_s0264.g060909 EMB2758 not classified & original description: CDS=1-2373 0.01 OrthoFinder output from all 47 species
Ceric.04G034400.1 Ceric.04G034400 not classified & original description: pacid=50632280... 0.04 OrthoFinder output from all 47 species
Ceric.19G069600.1 Ceric.19G069600 not classified & original description: pacid=50575437... 0.02 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.01 OrthoFinder output from all 47 species
Ceric.21G046800.1 Ceric.21G046800 not classified & original description: pacid=50603820... 0.03 OrthoFinder output from all 47 species
Ceric.27G036800.1 VAC1, ECB2,... not classified & original description: pacid=50605276... 0.02 OrthoFinder output from all 47 species
Ceric.29G070800.1 Ceric.29G070800 not classified & original description: pacid=50625555... 0.01 OrthoFinder output from all 47 species
Dcu_g11479 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g21452 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g31630 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28912 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g38000 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g50245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18152 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19510 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g18810.1 LOC_Os02g18810 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os04g53630.1 LOC_Os04g53630 Pentatricopeptide repeat-containing protein At3g20730... 0.02 OrthoFinder output from all 47 species
LOC_Os07g20420.1 LOC_Os07g20420 Pentatricopeptide repeat-containing protein At3g26782,... 0.02 OrthoFinder output from all 47 species
Len_g05435 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07224 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18044 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18514 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18962 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g33495 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44849 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_5858185g0010 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.01 OrthoFinder output from all 47 species
Msp_g28724 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g34503 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g48633 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g09710 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g10043 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g10444 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g23739 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g05130 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14721 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g47008 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57688 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g59837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20771 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07362 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07617 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13514 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27231 No alias cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.03 OrthoFinder output from all 47 species
Sam_g29286 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36269 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40765 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50518 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo132819 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g12442 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21674 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g54636 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e005071_P002 OSB1, Zm00001e005071 ssDNA-binding protein (OSB) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
CC GO:0000781 chromosome, telomeric region IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP HCCA
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0042162 telomeric DNA binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043047 single-stranded telomeric DNA binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
MF GO:0098847 sequence-specific single stranded DNA binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 490 536
IPR002885 Pentatricopeptide_repeat 88 118
IPR002885 Pentatricopeptide_repeat 464 488
IPR002885 Pentatricopeptide_repeat 565 585
No external refs found!