Aliases : ATRAB1A, ATRABD2B, RAB1A
Description : not classified & original description: CDS=550-1089
Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sacu_v1.1_s0127.g021845 | |
| Cluster | HCCA: Cluster_66 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g013329 | ATRAB1B, RABD2A,... | D-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g08649 | ATRAB1A, ATRABD2B, RAB1A | D-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.38G045700.1 | RAB1C, ATRAB1C,... | D-class RAB GTPase & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g01490.1 | RAB1C, ATRAB1C,... | D-class RAB GTPase | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g22787 | ATRAB1A, ATRABD2B, RAB1A | D-class RAB GTPase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Mp2g23010.1 | ATRAB1B, RABD2A,... | D-class RAB GTPase | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g103370.3.1 | ATFP8, RABD1,... | D-class RAB GTPase | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003924 | GTPase activity | IEA | Interproscan |
| MF | GO:0005525 | GTP binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity | IEP | HCCA |
| MF | GO:0004252 | serine-type endopeptidase activity | IEP | HCCA |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | HCCA |
| MF | GO:0005048 | signal sequence binding | IEP | HCCA |
| BP | GO:0006528 | asparagine metabolic process | IEP | HCCA |
| BP | GO:0006529 | asparagine biosynthetic process | IEP | HCCA |
| BP | GO:0006621 | protein retention in ER lumen | IEP | HCCA |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | HCCA |
| BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | HCCA |
| BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| BP | GO:0016311 | dephosphorylation | IEP | HCCA |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | HCCA |
| MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | HCCA |
| BP | GO:0032507 | maintenance of protein location in cell | IEP | HCCA |
| MF | GO:0033218 | amide binding | IEP | HCCA |
| BP | GO:0035437 | maintenance of protein localization in endoplasmic reticulum | IEP | HCCA |
| MF | GO:0042277 | peptide binding | IEP | HCCA |
| BP | GO:0045185 | maintenance of protein location | IEP | HCCA |
| MF | GO:0046923 | ER retention sequence binding | IEP | HCCA |
| BP | GO:0051235 | maintenance of location | IEP | HCCA |
| BP | GO:0051651 | maintenance of location in cell | IEP | HCCA |
| BP | GO:0072595 | maintenance of protein localization in organelle | IEP | HCCA |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001806 | Small_GTPase | 32 | 147 |
| No external refs found! |
