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  5. Sacu_v1.1_s0129.g021932

Sacu_v1.1_s0129.g021932


Description : not classified & original description: CDS=1-3567


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0129.g021932
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00232800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species
AMTR_s00137p00065490 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Adi_g003786 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g050352 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g057899 OSB3 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.04 OrthoFinder output from all 47 species
Adi_g097219 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101179 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g106085 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37861 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10279 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13258 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g24236 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g25829 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g35854 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g34282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37336 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28525 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene27883.t1 Aspi01Gene27883 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36332.t2 Aspi01Gene36332 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0005.g009227 No alias not classified & original description: CDS=1-1950 0.06 OrthoFinder output from all 47 species
Azfi_s0503.g073910 No alias not classified & original description: CDS=59-2179 0.03 OrthoFinder output from all 47 species
Azfi_s1596.g104539 No alias not classified & original description: CDS=111-3779 0.07 OrthoFinder output from all 47 species
Azfi_s2068.g108965 No alias not classified & original description: CDS=97-387 0.06 OrthoFinder output from all 47 species
Cba_g16658 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20670 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29889 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g30808 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.12G028500.1 CRR22, Ceric.12G028500 not classified & original description: pacid=50602410... 0.04 OrthoFinder output from all 47 species
Ceric.18G049200.1 Ceric.18G049200 not classified & original description: pacid=50621468... 0.05 OrthoFinder output from all 47 species
Ceric.22G020200.1 Ceric.22G020200 not classified & original description: pacid=50615278... 0.03 OrthoFinder output from all 47 species
Ceric.28G026700.1 Ceric.28G026700 not classified & original description: pacid=50570188... 0.05 OrthoFinder output from all 47 species
Cre01.g025950 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.01 OrthoFinder output from all 47 species
Dac_g19560 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g35258 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g35515 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g26802 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g38653 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g15996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008922001 No alias Pentatricopeptide repeat-containing protein At4g08210... 0.05 OrthoFinder output from all 47 species
LOC_Os07g07620.1 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species
Len_g33285 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54668 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06276 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g19989 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g37517 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_137736g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_89214g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Msp_g17153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06214 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g08298 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13990 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g23872 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g27956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g06239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16479 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25357 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g26690 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c6_28980V3.1 Pp3c6_28980 organellar single-stranded DNA binding protein 3 0.01 OrthoFinder output from all 47 species
Ppi_g46526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62708 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013199 No alias not classified & original description: CDS=1-744 0.04 OrthoFinder output from all 47 species
Sam_g34092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g49086 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g116840.3.1 Solyc03g116840 RNA editing factor (OTP81) 0.06 OrthoFinder output from all 47 species
Spa_g14016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14610 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21942 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 65 89
IPR002885 Pentatricopeptide_repeat 597 625
IPR002885 Pentatricopeptide_repeat 569 593
IPR002885 Pentatricopeptide_repeat 368 389
IPR002885 Pentatricopeptide_repeat 649 673
IPR002885 Pentatricopeptide_repeat 166 185
IPR002885 Pentatricopeptide_repeat 394 441
IPR002885 Pentatricopeptide_repeat 492 539
IPR002885 Pentatricopeptide_repeat 194 238
IPR002885 Pentatricopeptide_repeat 293 339
IPR002885 Pentatricopeptide_repeat 90 137
IPR008545 Web 987 1110
No external refs found!