1. Home
  2. Species
  3. Salvinia cucullata
  4. Sequence
  5. Sacu_v1.1_s0136.g022393

Sacu_v1.1_s0136.g022393


Description : not classified & original description: CDS=167-2386


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0136.g022393

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0074.g037385 OTP84 not classified & original description: CDS=80-2584 0.04 OrthoFinder output from all 47 species
Azfi_s0093.g043216 CRR22 not classified & original description: CDS=139-1788 0.05 OrthoFinder output from all 47 species
Dcu_g07600 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os08g04400.1 LOC_Os08g04400 Pentatricopeptide repeat-containing protein At5g50390,... 0.03 OrthoFinder output from all 47 species
LOC_Os10g30760.1 LOC_Os10g30760 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species
Smo107947 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Smo11063 REME1 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
Zm00001e001200_P001 Zm00001e001200 Pentatricopeptide repeat-containing protein At5g59600... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 81 127
IPR002885 Pentatricopeptide_repeat 180 223
IPR002885 Pentatricopeptide_repeat 581 628
IPR002885 Pentatricopeptide_repeat 255 282
IPR002885 Pentatricopeptide_repeat 283 311
IPR002885 Pentatricopeptide_repeat 483 510
IPR002885 Pentatricopeptide_repeat 455 480
IPR002885 Pentatricopeptide_repeat 655 679
IPR002885 Pentatricopeptide_repeat 154 178
IPR002885 Pentatricopeptide_repeat 553 577
No external refs found!