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  5. Sacu_v1.1_s0139.g022629

Sacu_v1.1_s0139.g022629


Description : not classified & original description: CDS=614-2965


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0139.g022629

Target Alias Description ECC score Gene Family Method Actions
Adi_g004836 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033617 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034364 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g068892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46792 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g11836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g19009 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g06739 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g17647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26963 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27561 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19946 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20195 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g26042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29708 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene07542.t2 Aspi01Gene07542 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene27322.t1 Aspi01Gene27322 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36332.t2 Aspi01Gene36332 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68197.t1 Aspi01Gene68197 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010584 No alias not classified & original description: CDS=134-2257 0.02 OrthoFinder output from all 47 species
Azfi_s1334.g101644 No alias not classified & original description: CDS=1-3543 0.01 OrthoFinder output from all 47 species
Cba_g29838 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g45912 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G019000.1 Ceric.02G019000 not classified & original description: pacid=50585115... 0.02 OrthoFinder output from all 47 species
Ceric.28G057800.1 REME1, Ceric.28G057800 not classified & original description: pacid=50570331... 0.01 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.01 OrthoFinder output from all 47 species
Dac_g04916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g45856 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06677 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g26885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01028747001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
GSVIVT01033872001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.01 OrthoFinder output from all 47 species
LOC_Os04g09530.1 LOC_Os04g09530 RNA editing factor (BLX) 0.02 OrthoFinder output from all 47 species
LOC_Os05g38190.2 LOC_Os05g38190 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
LOC_Os09g34870.1 LOC_Os09g34870 Pentatricopeptide repeat-containing protein At2g36980,... 0.01 OrthoFinder output from all 47 species
LOC_Os12g08140.1 LOC_Os12g08140 Pentatricopeptide repeat-containing protein At2g33760... 0.01 OrthoFinder output from all 47 species
Len_g02897 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g03276 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g04340 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07300 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06690 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07372 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g03214 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06660 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11260 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g25933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g35238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g06978 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03245 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06477 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56301 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59330 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59836 EMB2758 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0126.g021770 EMB2758 not classified & original description: CDS=1-1959 0.03 OrthoFinder output from all 47 species
Sam_g09072 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11848 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13864 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13892 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14712 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15563 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18645 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22188 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g22475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35987 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37213 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g079260.2.1 Solyc02g079260 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Solyc04g079410.3.1 Solyc04g079410 ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Spa_g11331 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06463 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24933 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028330_P001 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 625 673
IPR002885 Pentatricopeptide_repeat 155 202
IPR002885 Pentatricopeptide_repeat 424 473
IPR002885 Pentatricopeptide_repeat 324 372
IPR002885 Pentatricopeptide_repeat 501 526
IPR002885 Pentatricopeptide_repeat 704 725
IPR002885 Pentatricopeptide_repeat 230 255
IPR002885 Pentatricopeptide_repeat 122 151
No external refs found!