Sacu_v1.1_s0141.g022750 (PGP11)

Aliases : PGP11

Description : subfamily ABCB transporter & original description: CDS=1-3756

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sacu_v1.1_s0141.g022750
Cluster	HCCA: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00263610	ABCB19,...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
AMTR_s00056p00132920	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
AMTR_s00090p00165440	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
AT2G39480	PGP6	P-glycoprotein 6	0.03	OrthoFinder output from all 47 species
AT3G28860	ABCB19,...	ATP binding cassette subfamily B19	0.02	OrthoFinder output from all 47 species
Aev_g39147	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Als_g28385	PGP1, ABCB1, ATPGP1	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g38133	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene08453.t1	PGP11, Aspi01Gene08453	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene08454.t1	PGP11, Aspi01Gene08454	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene40552.t1	PGP1, ABCB1,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene62055.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0230.g059155	No alias	not classified & original description: CDS=1-966	0.01	OrthoFinder output from all 47 species
Ceric.02G084300.1	ABCB19,...	subfamily ABCB transporter & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.10G031400.1	PGP13, Ceric.10G031400	subfamily ABCB transporter & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.1Z238200.1	Ceric.1Z238200	subfamily ABCB transporter & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.36G048300.1	Ceric.36G048300	subfamily ABCB transporter & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g06939	PGP13	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g23401	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g43354	ABCB19,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Dac_g45466	PGP11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g52100	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01006613001	No alias	No description available	0.01	OrthoFinder output from all 47 species
Gb_11202	PGP11	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Gb_32125	PGP11	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_33058	ABCB19,...	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
LOC_Os01g34970.1	PGP11, LOC_Os01g34970	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
LOC_Os02g09720.1	LOC_Os02g09720	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
LOC_Os04g38570.1	ABCB19,...	auxin efflux transporter (ABCB19)	0.02	OrthoFinder output from all 47 species
MA_14136g0010	PGP20	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
MA_9415070g0020	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Mp2g02910.1	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mp2g06270.1	PGP20	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mp2g11920.1	ABCB19,...	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Mp2g21430.1	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mp7g16060.1	PGP11	subfamily ABCB transporter	0.01	OrthoFinder output from all 47 species
Msp_g17749	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g30508	PGP5	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ppi_g03992	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019194	No alias	not classified & original description: CDS=54-1700	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019197	No alias	subfamily ABCB transporter & original description: CDS=1-2220	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022862	No alias	not classified & original description: CDS=281-511	0.04	OrthoFinder output from all 47 species
Sam_g48720	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Smo176522	ATPGP4, PGP4, ABCB4, MDR4	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Smo419451	No alias	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
Smo99885	No alias	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Solyc03g122070.3.1	ABCB19,...	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Solyc06g009280.1.1	PGP11, Solyc06g009280	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Solyc12g098840.3.1	PGP11, Solyc12g098840	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Tin_g11244	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0005375	copper ion transmembrane transporter activity	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006825	copper ion transport	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0035434	copper ion transmembrane transport	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1093	1164
IPR003439	ABC_transporter-like_ATP-bd	404	553
IPR011527	ABC1_TM_dom	755	1007
IPR011527	ABC1_TM_dom	58	334

External Links

No external refs found!

Sacu_v1.1_s0141.g022750 (PGP11)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation