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  5. Sacu_v1.1_s0149.g023273

Sacu_v1.1_s0149.g023273 (ATGH9A1, IRX2, KOR,...)


Aliases : ATGH9A1, IRX2, KOR, TSD1, RSW2, GH9A1, KOR1, DEC

Description : cellulose synthase endo-1,4-beta-glucanase *(KOR) & original description: CDS=106-1938


Gene families : OG0001763 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001763_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0149.g023273
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Aev_g07872 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.03 OrthoFinder output from all 47 species
Ala_g30715 ATGH9A1, IRX2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17252 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.02 OrthoFinder output from all 47 species
Aop_g04850 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene12771.t1 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene51495.t1 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.03 OrthoFinder output from all 47 species
Ceric.1Z085400.1 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.04 OrthoFinder output from all 47 species
Dde_g10549 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01006265001 ATGH9A2, KOR2 Cell wall.cellulose.synthesis.cellulose synthase complex... 0.02 OrthoFinder output from all 47 species
LOC_Os03g21210.1 ATGH9A1, IRX2,... KOR-type cellulose synthase endo-1,4-beta-glucanase 0.02 OrthoFinder output from all 47 species
LOC_Os03g52630.1 ATGH9A1, IRX2,... KOR-type cellulose synthase endo-1,4-beta-glucanase 0.05 OrthoFinder output from all 47 species
LOC_Os04g41970.1 ATGH9A1, IRX2,... KOR-type cellulose synthase endo-1,4-beta-glucanase 0.03 OrthoFinder output from all 47 species
Lfl_g06116 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.03 OrthoFinder output from all 47 species
Msp_g09740 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.03 OrthoFinder output from all 47 species
Msp_g36506 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.03 OrthoFinder output from all 47 species
Nbi_g09314 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.03 OrthoFinder output from all 47 species
Ore_g20859 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.02 OrthoFinder output from all 47 species
Pir_g02285 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.02 OrthoFinder output from all 47 species
Pir_g14287 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.03 OrthoFinder output from all 47 species
Pir_g38165 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.03 OrthoFinder output from all 47 species
Ppi_g03146 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.03 OrthoFinder output from all 47 species
Sam_g19836 No alias cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.02 OrthoFinder output from all 47 species
Smo266522 ATGH9A1, IRX2,... Cell wall.cellulose.synthesis.cellulose synthase complex... 0.03 OrthoFinder output from all 47 species
Smo75214 ATGH9A1, IRX2,... Cell wall.cellulose.synthesis.cellulose synthase complex... 0.02 OrthoFinder output from all 47 species
Solyc05g005080.3.1 ATGH9A1, IRX2,... KOR-type cellulose synthase endo-1,4-beta-glucanase 0.04 OrthoFinder output from all 47 species
Spa_g25788 ATGH9A1, IRX2,... cellulose synthase endo-1,4-beta-glucanase *(KOR) &... 0.03 OrthoFinder output from all 47 species
Zm00001e005591_P004 ATGH9A1, IRX2,... KOR-type cellulose synthase endo-1,4-beta-glucanase 0.03 OrthoFinder output from all 47 species
Zm00001e007515_P001 ATGH9A1, IRX2,... KOR-type cellulose synthase endo-1,4-beta-glucanase 0.02 OrthoFinder output from all 47 species
Zm00001e042024_P001 ATGH9A1, IRX2,... KOR-type cellulose synthase endo-1,4-beta-glucanase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001701 Glyco_hydro_9 106 574
No external refs found!