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  5. Sacu_v1.1_s0152.g023452

Sacu_v1.1_s0152.g023452


Description : BBX class-III transcription factor & original description: CDS=1117-3330


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0152.g023452

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 CIA2,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
AT5G57180 CIA2 chloroplast import apparatus 2 0.02 OrthoFinder output from all 47 species
Adi_g075719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01431 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g30657 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0172.g055744 No alias not classified & original description: CDS=1-1599 0.03 OrthoFinder output from all 47 species
Ceric.08G070500.1 Ceric.08G070500 BBX class-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cre15.g635100 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g23913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011897001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
LOC_Os03g50310.1 LOC_Os03g50310 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Len_g23704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06124 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g19670.1 No alias transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Msp_g37830 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g15539 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17788 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g60427 No alias BBX class-III transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34850 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g04603 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47451 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012194_P001 Zm00001e012194 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Zm00001e030952_P002 Zm00001e030952 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
BP GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly IEP HCCA
BP GO:0010275 NAD(P)H dehydrogenase complex assembly IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 35 77
No external refs found!