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  5. Sacu_v1.1_s0155.g023610

Sacu_v1.1_s0155.g023610


Description : not classified & original description: CDS=1-2778


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sacu_v1.1_s0155.g023610

Target Alias Description ECC score Gene Family Method Actions
AT3G62890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g067950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09064 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27894 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00209.t1 EMB2758, Aspi01Gene00209 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30841.t1 OTP82, Aspi01Gene30841 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33080.t1 Aspi01Gene33080 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023505 No alias not classified & original description: CDS=32-2620 0.02 OrthoFinder output from all 47 species
Azfi_s0073.g037188 CRR22 not classified & original description: CDS=1-1875 0.02 OrthoFinder output from all 47 species
Ceric.02G045800.1 Ceric.02G045800 not classified & original description: pacid=50584171... 0.03 OrthoFinder output from all 47 species
Ceric.05G093000.1 Ceric.05G093000 not classified & original description: pacid=50577993... 0.02 OrthoFinder output from all 47 species
Ceric.28G057800.1 REME1, Ceric.28G057800 not classified & original description: pacid=50570331... 0.02 OrthoFinder output from all 47 species
Ceric.29G039600.1 Ceric.29G039600 not classified & original description: pacid=50625761... 0.03 OrthoFinder output from all 47 species
Ceric.30G017300.1 Ceric.30G017300 not classified & original description: pacid=50608904... 0.04 OrthoFinder output from all 47 species
Dac_g25047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35668 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29241 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g48258 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_118961g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.02 OrthoFinder output from all 47 species
Nbi_g06724 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27964 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05872 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05937 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42940 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g04999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g46501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g064750.2.1 Solyc04g064750 RNA editing factor (MEF12). serine carboxypeptidase 0.03 OrthoFinder output from all 47 species
Tin_g10878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 674 697
IPR002885 Pentatricopeptide_repeat 572 594
IPR046848 E_motif 818 872
IPR002885 Pentatricopeptide_repeat 291 338
IPR002885 Pentatricopeptide_repeat 495 543
IPR002885 Pentatricopeptide_repeat 189 235
IPR002885 Pentatricopeptide_repeat 393 440
IPR002885 Pentatricopeptide_repeat 699 746
IPR002885 Pentatricopeptide_repeat 598 644
No external refs found!